RNA id: XM_026921699.2


Basic Information

Item Value
RNA id XM_026921699.2
length 6677
RNA type mRNA
GC content 0.46
exon number 7
gene id arhgap35b
representative True

Chromosome Information

Item Value
chromosome id NC_047621.1
NCBI id CM018567.1
chromosome length 18889892
location 16744036 ~ 16756136 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GGGAGCTGATCCGGGCGGAGGGGCCGCCATTACCGGGGAAGCAAGAGAAGcccactttcacacacacacactcacacacacaccctgtgctCCTACACGCTAGCACACATTTCGGTGTGGTTTGGGAATTCGGTGGTTATTTATTCCACAGCTATGAAGCGTTAGAGCGGGATTTACCGGAATGTCAGCGCCGCGCGTGCTCGCCGCATAGGATGAAATGAGCGCATATTTattacaactacaacaacaaagGACATCATGATTGATCAGGAGAAGCGTGGGACAGCCGGAGGAAGCCAATGAGGCGAGGATTGTGTGCCCTGGCGGAGAATAGCGCTACATATCCAGCTGTAATCACTTCCTCCGTCCGACGTCGCCGTTCATGGCTGCTGGGAAGCCGCGGTTCTCGAAACCGAGCCTGAGCCCCAGGAGCCGGGTCAAACCCAACACGAAATACTGCTTTTTTAACCCCGAGGAGCTGCTTGTCCGTGTTATATCCCCTCAGAATCAGTTTAAATCTTTAATCTGTGCTATACACATGTTTTTTGGGGCATTGTTCATGgtttaaagtgtataaaagctACAGAAGCggctgaaataaataaagcctcACGCCGCCGGCCTGGACTCGGACGAGCCACGGATAGAACCAAATGATGgaTGGACATCAGTAAAGAACAACTCTGAAACATTTGATATTTACTGTCGAGCCACTCCCACCCGATTGTCACTTTTGTTTCTGTACCCTACATTCTATAATATGGGCAAGAAGCACACAATCTAAATTAGTCTGATGTAAAGCCAGAGAAAACACTGCAGCAGATATGATTGAATAAATCTATTTATAAACACGTCGAAGAGTGAAGCCTGTGTTAACCCTTACGGCATGGCAAGATGAGTGCCTGCAAACGATGATGGCTAAAAAGCAAGATTCCCGGGTGCCTACCTACAACCTAGTTGTAGTTGGTCTGTCAGGCACTGAGAAAGAGAAGGGCCCATGCGGAGTTGGCAAGTCTTGCCTTTGTAATCGCTTTGTCCGCCCTAGTGCAGATGACTTTCACCTTGATCACACATCTGTGTTGAGTACCAGTGATTTTGGTGGCCGAGTTGTCAACAATGACCATTTCCTGTTCTGGGGAGAGGTGGAGCGAGTCTTGGAGGATGGCACTGAGTGTAGGATGCATGTGGTGGAGCAGACCGAGTTTATTGATGACCAGACCTTTCAGCCACATCGTAGCACAGCTTTACAGCCTTACATCAAAAGAGCTGCCTCCACAAAACTGGCCTCTGCAGAAAAACTCATGTACTTTTGTACAGACCAGTTGGGCCTGGAACAGGACTTTGAGCAAAAACAGATGCCTGAGGGAAAGCTGCAGGTAGACGGATTTCTACTCTGTGTTGATGTAAGTCGAGGGATGAACCGCAGCTTTGATGATCAAATGAAGTTTGTTACCAACCTGTATAATCATCTAGGTAAAACTAAAAAGCCTGTTGTGCTGGTTCTCACTAAGTGCGATGAAGGAGTTGAGCGATACATCAAGGACTCTCATACATTTGCCATCAACAAAAAGAACTTGCAAGTTGTTGAGACATCAGCTCGATCTAATGTCAATGTGGACTTAGCTTTCCTTACTCTGATTCAACTCATTGATAAGGGAAGGGGCAAGCATAAGATAATACCTTACTTTGAGGCTTTAAAACATCAGAGTCAAATAATTGCCACTGCAAAGGACCGATATGAATGGTTAGTGAACCACATAGTGAAGAATCACAACGAGACCTGGCCTGCTATCAGCCGACGTATGCAGCCATCACAAGAATACAAGGAATATGTCTTTTTAGAAGGTACAGCTAAAGCAAAAAAGCTTTTTCAACAGCATGTTCATAGGCTTAAACAGGAGCACATTGAGAGACGTCGTAAAGCATATTTAAGTGCTCTCCCACTGGCCTTGGGTTCCTTAGTGTCTGAATTGGCTGAAATTGAGCATTTAAGCTGGTCTGGGGTACAGAAGGTACTGGAGTCCAAAAAGGACTTTGACCATTGGTTTGTGGTTCTGGAGGATGCACCATGGGAGGACACGCCACATCTTGACAATATGGAAGATGAGCGCATACCCTTTGACGTGCTGGATACGACTGCCGCAGAGATCATATTTGATGCACATCTTGAACATTTGCGAAATGAGTGCAAGCGTGCCGAGATGCGACATGAATTTAAGATGAAGCTGGCATCCTCACCCTTTGTCACCCCTGGCAAGCCTTGGGAAGAGGCACGGAGCTTCATAATGAATGAAGACTTCTATCAGTGGTTGGAGGAGCCAGAATACTTGGATATCTACAATAGGCACCAAAAGGTGATCATAGACAGGGCAAAGGAGGATTTCCAGGAACTTCTGCTGGAGTACTCTGAGCTTTTTTATGAACTTGAAGTGGATGCTAAACCAAGTAAAGAAAAGATGGGGGCAATTCAGGAAGCACTGGGAGAAGAGCAGCGCTTCAAGGCATTACAGAAACTGCAGGCAGAAAGAGATGCCTTAGTATTAAAGCACATCCATTTTGTTTATCACCCAACCAAGGATACTTGCCCGAGCTGCCCATACTGTATTGACAACAAGATTGAGCAAATATTAGCCTTGTGCTTCCCTATGCGCTATCCTTCCTTTGGAAAGTCTCATATGCTTGAAAGCAAAGCAGAAAGGATTAACTTAGTGATTCTGGGCAAAGATGGTTTAGCAAGAGAGTTGGCTAACGAGATTCGGGCTATGTGTGCCAACGATGACTACTATGTGCTTGAAGGCAGAATATATGAGCTAATACTCAGGCCTATTGAGGGTAATGTTAGGCTTCCTGTTAACTCCTTCCATACAGCTACATTCACACCTCATGGCTGCCTGTGTTTGTACAATTCCAAGGAATCTTTGTCTTATGTTCTAGAAAGTATTGAGAAGTTGCGTGAGTCCACACTTGGCAGAAGGGATAACCACATAGCTCAGCTTCCTTTGTCTCTCTTGTTAGTCACTAAGAGAGGTGTTGGAGCTTTGAGTGACCTTGGTGGGGAGACAGCCCAAATCTTAATCACACAGGGTCAGCAGGTAGCTATGAAACTGCAATGTGAATTTTTGGAGCCAGCATCCCCTGGCTCAGGCTATGGGCGGAATGTGAATGAGAAACAGATAAACCAAGTATTAAAGGGTTTGTTAGACACAAGAAGGAATGCTGCATTTCGCAGTGGTTCCCCATCTTCACCCCCTTTGCCCCCGAGTATCAGAGACATGCAGCAGGACCAGAATCCAGAGGCAGACTTACGTATTGTCATGTGTCTAATGTGTGGAGATTCCTATGACGTAGACCAACTTCTCTCGCCCTTCTTACTGCCTCAGCATTGCAGGCCAACCAGTTCCAGTGGTAATTCAGTGGTGCTTGAGCAGACAGTCGGTGACAACAGGCTAACAATAGAGCTGTCCCTACTGTCATATCATGCTTCTTTTACCATGCGCAAGAGTCGGCTGGTACATGGGTACATAGGTGTTTACTCTGCTCGCCGCAAAGCCTCGTTGGAAACCTTGTGTGCCTTACTCTGTGAGGTTCCAGACATTGTTCCAGTCCAGCTGCTAGCTGtgggagaaacagagacagagcttACAGACTCAGAGTCTGCACGAGAGTTGTTGGTGCAGGGCGAAGAACTGGCCCATGAAATTGAGGGTCGTTTTGCTAGTGTGGTCTGTGGACCAGGTGGAGTTGTGGGAGGCCTGCACAGAATAGACCTTTTACAACCTTTCTTCATGGAGGTAGCAGAGAAGAAGACTCTTGTTGAGGCAACTCATGTATACGATAATGCTGCAGAGGCCTGTAGCACAAATGAGAATGTGTATTCACCCCATTGCGGTTCCCCTAGCCCTGTAACTATGCTGTTAGATTATGAGGAAGAGATGGAAGCTTCACCGCCTTACTTTGATGGCACCCTCACCTCTCATAGCGGATTCAAGCTCCCTGACTTGGACTCGGGTGACACATTCTCTGTCATCTCTGAACTCAGTACTTTTGAGAACAAGTTGAACAGCAAAGTCCCTTTACATATGAGGCCCAAACCTAGTGTCACTTTTGACTTCAGAAAGCACAACTTTAATCCCTACATGGACTCTAGCCATCGGCGGTCTCTTACCTCCAATGTCACCTGGCCTCCCTGTGGGGACGGGGTGTATGATCCATCTGACTATGCTGAGCCAATGGATGCTGTTTCCAAGCCTCGACCCAGCCATGAGGAGAACATATACTCAGTGCCACATGACAGCACACAGGGTAAGATCATCACCATAAGGAACTCCAACAGAATGCACTCTAACGGAGGTGTGAATGGCTCGGATAGTGAAGGGGATGGCAGCTCTTTGGAGCGGCGCAGGAAGTTCTCTTCTGCAGGAGTAAAACCACGATTGTACCGAGATCGATCCAAGCGCCTAGGCAAGTTCAGCAGCTTCCGTACCAGTTTCTCCATTGGCAGTGATGATGAGTTTGGTGGTCTTCCGAAAACAAAGGAGGATGATGTGACAGTTTTGAAAGGAGAATCGCTGATTGAGGAAGGGGATGATAAGAAAAGGAACATTCTGAGGAGCCTTCGTCGACCAGGCAAAAAAACCAGGCTAAAGCCTCGACACTCGATCTCCAAACCTCTGGAGAGTACTTACTTTGGGGTGCCATTAGTTAATGTTGTGTCACCTGACAAACCCATCCCAGTGTTCATCGACAAATGTATCCGCTTCATTGAGGCCACAGgctTGACTACGGAGGGTATATATAGAGTGAGTGGAAACAAGTCAGAGATGGAGAGCATGCAGCGACAGTTTGAGCAGGACCATGGCCTGGACTTGGTAGAGAAGGACTTTCCGGTGAACACAGTAGCTGGAGCATTAAAGAGCTTTTTCTCTGAGCTGCCTGATCCACTGGTCCCATACAGTCTACAAGTGGAGCTGGTGGAAGCTTTCAAGATAAATGACCGAGAGCAGAGACTGCAGACCATGAAGGATGTGCTGAGGAGATTTCCTCGTGAGAATTATGAAGTTTTCAAACATGTCATGGGCCACCTGAACAAGGTTAGCCAGTGGAACAGAGTCAATCTGATGACCAGCGAGAACCTGTCCATCTGCTTCTGGCCCACGCTCATGCGACCTGACTTCACCACCATGGACGCTCTCACGGCCACACGCACCTACCAGACCATCATCGAGACGTTCATCCATCAGTGCGCCTTTTTCTTCTACAACCAAGCTCCCGCTGAATCTCCCACAGGCCTCTACGGCACTGCTGTGCCCTCTGCCCTGCCCCCTTCGCCCAGCGCCGCGCCTTTGTGCACCCCTCCACCTCCGCACTTCAGCCCGGCTCTGCATTCGCCCCCCAGCTCGCCCCCTCAGAGCCCCCTCACCGTCCccgcagagacacacacactgtgagacagggaaacacacacagctaaagaTTGCTCGTATTTACTCACACGTACCGTATATGCTGCAGTCTTTACATAGACACTTCATATGTAAACACGATTACACACAAGATGTGTGCATATTTAAATTTGCATGTAGCGACTGGATTCAACGCTGTCTGAGAGTTTGTGAATGATTTCCGTTTTGCACACACTTGAAACTGTAGCGTGCTGATGAcgcacacggacacacacagtgctcctTTCTCGGTGTGGACATTCGTCACTGTTAAGGGGGACCAGAACTTCTTAATCCAAGTCCACGTTCTGCAGTTTAGCAGACTTCTAAGTGTGCAGTTTTCCTGTTCTTGTTGTGTctctccatttaaaaaaaaaaaataattctctcACTCTATCGCTTAACTCCATCCATTCCTGCTTTCCTGATCTCAGACTGTAGCTGCTTTTTTCAGCCACACATGAAGGAAATACAGTAGGGAGACGCACTACAAACGGAAATCCATCCAAGCACTTATTCGAACGCTCTTTGATGAAGTTAAACAGACACTTTGAGAGAgtgctgattttaaaaaaaagagagagagataaatagaATTACTATTGCTGCATGCTTATTTGCAAAGACAAACTTTTTTCCAGTGTTGATTTAATCTCCCTGATCCCTTGTTAAAAGACAGCATggatttgagaaaaaaaaaaaaaaacattgaagaTGTCATGAaagttttgattttgttttcttctctctgtgaTATGAAGCTTTGACGGTTTTGCTTTTATTGGTTCCTGTGGATCTGTGCTCTTTTTATGAGATTTGATTGGATGAATCTGGAACTCCAGAGGGTTTGACCGCTCCGAGACATTTAATGACTTTGAACTTTGATATTTAACCTCTAAACCTTTAACCTTTTAGTCAAGGGTGAACCCAGAAGCCTCCCACCCTAAAAAAATGggacgttaaaaaaaaaaagacacacacacatatacacacacatacacacacgggCCTTCTTTGGACGTCCTCTGTTTTTGTCACTTACTAATATAagcactttgattttttttttttttttgatgttttatttaggCCTGATTTTGTGAAGCGTAACACTGAATTGCATTTGGCTTAGCCTGTGTCGGGGGAAGTTTATTATCCTCATGAAGCATCTGTTCATCTCTGTACTGGATTTTCCTTGTATGTCTGTGACATTAAGACTAAACTGCAACTAATGTA

Function

GO: NA

KEGG:

id description
K05732 ARHGAP35, GRLF1; glucocorticoid receptor DNA-binding factor 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU460340 lncRNA downstream 45257 16646975 ~ 16698779 (-) True G388359
XR_004577437.1 lncRNA downstream 54991 16687035 ~ 16689045 (-) True LOC117596255
TU460049 lncRNA downstream 308657 16429227 ~ 16435379 (-) True G388134
TU459998 lncRNA downstream 406912 16334604 ~ 16337124 (-) True G388091
TU459986 lncRNA downstream 436910 16306509 ~ 16307126 (-) True G388082
TU460375 lncRNA upstream 2104 16758240 ~ 16763476 (-) True fxyd2
TU460398 lncRNA upstream 73612 16829748 ~ 16838048 (-) True G388408
TU460385 lncRNA upstream 87857 16843993 ~ 16850404 (-) True G388400
TU460396 lncRNA upstream 189777 16945913 ~ 16951051 (-) True G388406
TU460395 lncRNA upstream 192839 16948975 ~ 16950536 (-) True G388405
XM_034300959.1 mRNA downstream 2944 16712149 ~ 16741092 (-) True LOC113531483
XM_034300825.1 mRNA downstream 40768 16694308 ~ 16703268 (-) True LOC113531479
XM_026921725.2 mRNA downstream 75788 16658651 ~ 16668248 (-) True LOC113531175
XM_026921724.2 mRNA downstream 75824 16658651 ~ 16668212 (-) False LOC113531175
XM_026922247.2 mRNA downstream 112672 16625953 ~ 16631364 (-) True LOC113531477
XM_026921822.2 mRNA upstream 2108 16758244 ~ 16763473 (-) False fxyd2
XM_026921752.2 mRNA upstream 13630 16769766 ~ 16780055 (-) True tmprss13b
XM_026921797.2 mRNA upstream 33018 16789154 ~ 16803393 (-) True scn4bb
XM_026921787.2 mRNA upstream 52356 16808492 ~ 16818245 (-) True mpzl2b
XM_034300751.1 mRNA upstream 76746 16832882 ~ 16839380 (-) False rnf214
trnam-cau_51 other downstream 308766 16435198 ~ 16435270 (-) True trnam-cau_51
trnam-cau_50 other downstream 312572 16431392 ~ 16431464 (-) True trnam-cau_50
XR_003403223.2 other downstream 363249 16377585 ~ 16380787 (-) False LOC113531235
TU459046 other downstream 1820652 14916662 ~ 14923384 (-) True ccdc84
XR_003403286.1 other downstream 2828539 13915364 ~ 13915497 (-) True LOC113531684
TU460427 other upstream 210152 16966288 ~ 16970026 (-) False crx
LOC117596251 other upstream 299447 17055583 ~ 17057882 (-) True LOC117596251
TU460777 other upstream 534208 17290344 ~ 17328020 (-) True G388705
XR_004577381.1 other upstream 781299 17537435 ~ 17544583 (-) False LOC113524239
TU460953 other upstream 912232 17668368 ~ 17727818 (-) False LOC117596207

Expression Profile