LOC117596251


Basic Information

Item Value
gene id LOC117596251
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047621.1
NCBI id CM018567.1
chromosome length 18889892
location 17055583 ~ 17057882 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>LOC117596251
GTGGagtctctctttcacttctcTCTGAGTGGAAGAACGACAAACTCTGTATATTGATGCATTAAAAAATTCCATCTAGAATGTATTTGAGTTAAACTCAGTAAAGCAGTAGGATTCCACAGATGATATAAATACTGAAATAGATACAACATGATAACTTTGACTCTAAACAACTCAGTGTAAAGATGTACAGATGTAAAGATGTGTACTCTAAAGCACATGACGGTAATGTAGTAGCTcagctgtggtgtgtgttgttgagCGTCTCCTCCCTCTGCccctcctcctgtctctcttatAGCACGTCCCTGCAGTCTCTCCTTTATCTGCTCCTCACGCTGCTCATCTCTTCACTCAGCACGAGAGTCTCCTCACACACGGACACGATGCTGCCAGCGCTCTGCTCTCTCTTCACTGCTCTCTCATGTGTCAGTAGTGTGATTGCAGTGACGCAGAAGCCTCCTGTTCTCACACTGACTCAAGGACAGACGGCCACCATGGACTGTAATCTGAGGACTGTTGTTAACGCTGCACGCTGGTACAAACAGGTTCCAGGAGGAGTTCCTCAGTATATGTTAAGTAATTTTCATGAGTGGGATGCTCCTAAATATGGATCTGATTTCTCGTCTCCTAAATTCACATCAACACACTCCTCTAAATCAGATTACAAACTGATTATCAGTAATGTAGAGGTGGGAGACTCAGCAGTGTATTACTGTCACAGATGGGACAACCCTGCTAAAGAGCACGTATCACAGTGATGTACACCATGACAAAAACCTCCTCACTGCTCACACTCACTTCTGCTGTCACACAACACgagaaacaacaaaaacctGAACTTCAAATCATTGGAACTGAAGTGGAAACTCACTTGATGTGCTCTCCACTGAAGAAGTTTCAGCACTGAATCAGAAGGCTTTTTCCACACTATTTGGACAAACGGATGTAGTGGATTTATAAGATGTAGCAGTAAGATTTGGAACTGGACTCGTCAGAACGATTCGATCATGAAAGTGGATCAGAGAGACCATGTACATTATATttggtcattttatttaaaaagaaatgtatattCCTTACCAGAGCATATCTGGtatcattttattccttatttcatggtgaaaaatacacacacatatgtgcagATCAGAGCCATCTGGTCTGTTCAATTCTGAGCTTCTTGATCATCCTTATCACACCTTCTTGACCTCCTCTCCCAGACAGAGGGTCTTGTGTTTACAGCCCAATTAGGACCCTGGGATGACTTGTCCAGGTTGTGGCCTCATTCTACCATAAAAGgacattaaaagaaagaaacaaaataaatcaacagcTCATTTAAATCTACCATTGATTAAGGGTTAATGGAAAAGAGGTGTAAAGTGTTTTTCCCTCCTGTTATCGTTATAAAGCTATACTTTAATTTTACTTGGCCACATTAATGGATATGTTCAGCAGACAGTCCTGCATGCTGTTCACTGCTCAGTGGACTGATGAAGAGGTGTGATGTGACAGCACATGGTGAAATTAATGTGCATGTCAGCAGTAAATGATTTGATATTTCTCTGATAGACAAGCAATGTAGCATCATTATCATACTTCATTACTCCACTGCAACCTAAATCACTAAACATCTTCGTCTAAACACTATGCAGTACATCATCAGTGAAACTCTACTCAGATGATGAGGATTGTGTCATGATATGTGTCAGGTTCTGGCCAGATTTGGGAATgttatttaatatcaatttcCTGATTTCATATTAAACCCTTGAGCGTATCATGATTTCATATTAAACCCTTGAGCGTATCTGGTGAGACATTTCTGTAATGAGCGCAGCACATGGGAAAGTGTGTAACAGTGCGTTTATCAGAACATGACCCAGAGTCAGAGACACTGAAGTGGACATCCAGAacaacatccatccatctcccAGTCCAGATAATACACAGAACTGTATGGTCCTGTCAGTGTCTATAGTTTAACTCACACTGACTCATCGTACATCACGGATGGAGAAACACACTCAGGATACACCTGCTGGTCCTCACACTGACATTTTAGCTCTATGTAAATGATGAGCTTCTTCTCTGAAATGTAGAGGGACACGTTCTACATGTAACTGATTTATTTCATCTACAGAAATTGTGTCATTGTAACAATTACTCTGAGATCAGCTCATTAAAAAAGAGTCTTTTTAAGAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC117596251 True 2208 V_segment 0.41 2 17055583 17057882

Neighbor

gene id symbol gene type direction distance location
LOC117596250 LOC108259908,LOC108260251 coding downstream 2946 17046590 ~ 17052637 (-)
nccrp1 nccrp1 coding downstream 16031 17035458 ~ 17039552 (-)
slc8a2a slc8a2 coding downstream 21765 17008524 ~ 17033818 (-)
srsf7a LOC108260117,LOC108437054,LOC103046837,LOC105006373 coding downstream 48251 16999734 ~ 17007332 (-)
LOC113531238 NA coding downstream 100410 16951381 ~ 16955173 (-)
mark4a mark4a,LOC108444027,LOC107700234,LOC107746361,LOC107596145,LOC107693438,LOC105006905,LOC102194939,LOC100708718,LOC101472647 coding upstream 12534 17070416 ~ 17097720 (-)
exoc3l2a LOC108260004,LOC108444026 coding upstream 55225 17113107 ~ 17131362 (-)
ppp1r14aa LOC108260008 coding upstream 76569 17134451 ~ 17143739 (-)
dlb dlb,LOC108260005,LOC107746357,LOC107596148,LOC108444019,LOC107683914,LOC105006902 coding upstream 86933 17144815 ~ 17154352 (-)
zgc:153990 LOC108260006 coding upstream 106921 17164803 ~ 17170161 (-)
G388440 NA non-coding downstream 66568 16978449 ~ 16989015 (-)
G388406 NA non-coding downstream 104532 16945913 ~ 16951051 (-)
G388405 NA non-coding downstream 105047 16948975 ~ 16950536 (-)
G388400 NA non-coding downstream 205179 16843993 ~ 16850404 (-)
G388408 apoa4 non-coding downstream 217535 16829748 ~ 16838048 (-)
G388692 NA non-coding upstream 144904 17202786 ~ 17202992 (-)
G388698 LOC100304549,LOC100690460,LOC100219516,LOC106514001 non-coding upstream 224218 17282100 ~ 17284601 (-)
G388709 NA non-coding upstream 285197 17343079 ~ 17355359 (-)
G388754 NA non-coding upstream 352121 17410003 ~ 17411908 (-)
G388785 NA non-coding upstream 494313 17552195 ~ 17552678 (-)
crx crx other downstream 85557 16965966 ~ 16970026 (-)
fxyd2 NA other downstream 292107 16758240 ~ 16763476 (-)
LOC113531235 NA other downstream 674796 16363494 ~ 16380787 (-)
gltpd2 LOC108260402 other downstream 1167524 15882338 ~ 15888059 (-)
nrgna NA other downstream 2028714 15018893 ~ 15026869 (-)
G388705 nono,LOC103047741,LOC107672625,LOC107741185,LOC107756548 other upstream 232462 17290344 ~ 17328020 (-)
LOC113524239 NA other upstream 477545 17535427 ~ 17544583 (-)
LOC117596207 LOC108262004,LOC108262359,LOC108260034,LOC108260038 other upstream 610486 17668368 ~ 17727825 (-)
G389092 NA other upstream 817033 17874915 ~ 18277958 (-)
smarca1 LOC108260009,LOC103034185,LOC105028962,LOC106603320,LOC106567799 other upstream 1015830 18073712 ~ 18094773 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01098551_00000076_00000589 NA coding CI01098551 null 76 ~ 1309 (+)
mexican tetra (Astyanax mexicanus) LOC111197113 LOC108414743,LOC108259908 coding NW_019171158.1 APWO02000756.1 41646 ~ 45519 (+)