slc8a2a (slc8a2)


Basic Information

Item Value
gene id slc8a2a
gene name slc8a2
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047621.1
NCBI id CM018567.1
chromosome length 18889892
location 17008524 ~ 17033818 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034300430.1
GCCGCGGTGTGTGTCGTATTCGGGGATGCTTTCTGacgacaggacacacacacacacacacacacacatgcacacacatgcacagaaagtAATAATCCAGGACAACATCTAAGAAGGTGCTGAAGGTGTTGGACTGGAccttaaaaaaaggaagaagaagaaaagcatctcacttGGCTTCCACACCAGCGATGCACGTGCCATTGCAATAGAACCTGAGGAGGAGACTGTCCCTCTCCTGCCTGCTCCTCCGTGGTCATGGCGTATCCTTTCCTCCTGCGCCTCCTCGTcctgtccgtgtgtgtgtgcggcagTGTTCAGGTGAACACCAGTGCTAAGCGGAGCTGTATGGACAAGGTGGAGTGCGCCCACGGGattctacttcctgtttggctCCCTCACAACCCGCCACTGCCCCAGCAGGTGATTCGTGCGATCATCTACTTCCTGTGTCTGCTCTATATGTTCCTGGGTGTGTCCATCATCGCTGACCGCTTCATGGCCGCCATCGAGGTCATCACCTCACAGGAGAAAGAGGTGACCATTACAGGGCCGAATGGGGAACAGACAGTGACGACGGTGCGGATATGGAATGAAACCGTATCTAATCTCACTCTGATGGCCCTCGGCTCCTCCGCACCAGAGATCCTGTTGTCAGTtatagagGTATGTGGGCATGGCTTCAAATCAGGCGAGCTTGGCCCAGGCACGATCGTGGGCAGCGCTGCCTTTAACATGCTCGTGATTATCGCAATCTGTGTGTTCGTAATCCCGGACGGTGAGGTGAGGAAGATCAAACACCTGCGCGTGTTCTTCATCACCGCCTCCTGGAGCATCTTCGCCTACATTTGGCTCTACCTTATCCTCTCCGTCATATCCCCGGGcattgttcagGTGTGGGAAGCCCTGCTGACCCTCTTGTTCTTCCCCATCTGTGTCTTGATGGCATGGATTGCAGACCGGCGGCTCCTCTTCTACAAATACCTTCATCGGCGCTACCGTGCCGACAAGCGACACGGCATCATTGTGGAGACAGAGGGCGATCTGGCACCCAATGGCATTGACATCATCATGGAGGGGAAATTCCATGGCAATGCCAATGGTGGCCCTAGCAACACCGCCAGCAACGTCAACAGCATGGAGACAAGCAAAGACTCTGAGCAGGACCGTGAGGAGGTGATCCGCTTACTGCGTGAACTGCGGCAGAAACATCCGGATAAAGACTTGGACCAGCTGATTGAGATGGCTAACTACTCAAACCTGCAGAAGCAACCCAAGAGTCGTGCGTTTTACCGCGTACAGGCCACACGCATGATTATCGGAGCTGGAAACGTGTTAAAGAAGCATGCTGCAGCAGAACAGGCCAAACGTGCAGGGCCGAACGCCGGCCCCGATGATGATCTGGTGACTTGCGCACATGTGGCCTTTGAGCAGGATCGTTATCGCTGCAGTGAAAACTGCGGCCACCTGAGTGTATGGGTTATACTGTGGGGGGGCAGTGGCTCCGGAACATTCCAAGTGGACTACCGGACTGAAAATGGCTCGGCCAAAGCTGGAGTGGATTACGATTACTCTGAGGGAACGCTGGAGTTTCAACCTGGAGACACACGCAAAGAGATAAAGattGGTATCATAGACGACGATGTTTTCGAGGAAGACGAGCATTTCTTTATCCGTCTCTCGAACCTGCGCGAGCCAGGGGTCGAAGCCACAGAGGCCGCCCGATTGGTGGAACCACTGGTTGCCACTGTAACAATTCTGGATGATGACCACGCGGGTGTTTTTTCATTCGGGCGGCGTGAGCTTCTTGTTGCCGAGTGTGCGGGTGTTGCTGAGGTAACTGTCACTCGCGAATCGGGCACCCGGGGCACCGTGGTCATCCCGTTTCACACAGAGGATGGAACGGCACACAGTGGAGTCGACTACCAACAAACACAGGGCGAACTGGAGTTCAGCAATGAGGAGAGCtgtaagaCATTACAGGTGCCAATCATCAATGTCCAGGAATATGATAAGCGAGAAAACTTTTACATCGTCCTTGAAGAACCTCGGTGGCTCAAGAGAGGaatttcagGTGCTCCCAGTGCTGAGCAGGAAGAGGCGAGAAAGATTGCTGAGAAGGGGCCGGTTCTGGGGGAGCACAGCAGGCTGGAGGTCATTATTGAGGAGAGCATGGCCTTTAAGgacactGTCGATCGTCTGTTAAAGGACACTAACCTGGctgaagtgattggaacacacACATGGAAAGAACAGTTCATTGAGGCTGTCACTGTCAGTGcaggaGAGGACGATGAGGGCGAAGGGGGCGAGCCACGCCGGCCGTCCTGCTGCGATTACTTCATGCACGTGATGACGGTGTTCTGGAAGCTGGCATTCGCCTTCATCCCGCCCACTGAGTACTGGAACGGCTGGGCTTGCTTCATCGTCTCCATCCTCGTCATCGGCTTCCTCACGGCCATCATTGGAGACCTGGCGTCTCACTTCGGCTGCACCGTGGGGCTGCGGGACACCGTCACGGCCGTGGTGTTCGTCGCTCTTGGCACCTCcatcccagataCCTTTGCGAGTAAAGTCGCGGCGGTTCAGGATCAGTACGCCGACGCCTCGGTGGGAAACGTGACAGGCAGCAACGCTGTAAACGTCTTCCTGGGGATCGGCGTGGCCTGGTCCATCTCAGCCATCTACTgggaggtcaaaggtcaggcgTTCCACGTGGAGCCGGGCTCGCTGGCCTTCTCTGTCACACTCTTCACCATCTGCGCCTTCATCAACATGGGCGTGCTCATGCTGCGGCGCCGCCCCTCTGTGGGCGGAGAGCTGGGTGGGCCCAAAGCCATCAAGATCCTCACCTCCATGCTGTTCATCGGCCTGTGGCTCATGTACATCACCTTCTCCAGCCTGGAGGCGTACTGTCACATCACAGGCTtctgagaaaacacacatagACACCTTCATACACTTTTGTACACGCTGGGGTCATCAGGAAGACTAAACTCTACATtttgacccttttttttttcacccacaaTGAAACCGAGAGGCCttcttcaccatcatcatcagcttCATCTACAGGGGTGGATAAACTcttacactttattatttaacCTGTTATAACAGGACACTACCATCATTAAGGAGAGGAGGAATTATCCTAAACAACCAAACCAAAATATTTCACATGACTGATATTTACACTCGATTGTGAACTGATGGACTGAACgagtgaaatgaatgaatggaactCACAAATAATGGTTTCTTTCATTGTGGATATTGTATGGTTGTAGTATTTACTCACTTAAATGGATATAGCACTAAAAATGTGTCAGGATTATTAACTAATAGTAGAAATCATACACAGAAAAAATGTCTCCTGTTCCAGGATAttcttataaaattatataagaGTTTGGAGAACATTTAAACCCAACAGCtcatattgtttttaattaaaattacacaaaatgaaCAGTATGTTATTCTGATTTATGGAAGCATCTTAATACAGACTCAGTTAATCATGATATTATGCTAGATATTATTCTTATCTTATAATATTGTTACTAATTAAATAGCATTAATGAAGATTCTTCTGGAAAACGTACAATAtagtgtcccacaaggctctgttctaGGTCCCttattgttttccttttatatcCCTTTCCCTCTCACACCATCTTTatccttttttcctcattttccttttttaattttctttttctcattgttGTTTTCTCATTgtctcttttcctcctcctctcttctttctccttttctaccTCCTCTGCTTCATTCTCCCCTTACTTTCATTCTCTATTCCATTTTCCCTTTCTTCaccatctctttttctctttcccctTTCTCCCTTTCCCATGTTCCCTCTTTAGATCTTATTTGACAGACAGTTACTAGTTTATTAGCATTAATGTAGAGTCTATTTTAGGCCACTTGGCTTTcattatgctgatgacacaatTATACTTATCAGTACAGATTTAGCAGAGCAGCTACACAAAATGGAAGACTGTTTCAAATATATAGAAACATGTACAAATAGAAATATCCTTCTTATAAattagaataaaacaaaaatactgaTGTTGATTACTAAGACTGTCGGCGATAACGCTACTGATTCCACCTTAGAGCTTGACTGCTGTTGTGCTGTTGTTAAGGACCTTGA

Function

symbol description
slc8a2 Predicted to enable calcium:sodium antiporter activity. Predicted to act upstream of or within calcium ion transport. Predicted to be located in membrane.

NR:

description
sodium/calcium exchanger 2-like isoform X1

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0006816 calcium ion transport biological_process
GO:0007154 cell communication biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005432 calcium molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034300430.1 True 4192 mRNA 0.49 13 17008524 17033818

Neighbor

gene id symbol gene type direction distance location
srsf7a LOC108260117,LOC108437054,LOC103046837,LOC105006373 coding downstream 1192 16999734 ~ 17007332 (-)
LOC113531238 NA coding downstream 53351 16951381 ~ 16955173 (-)
gjd1a gjd1a,LOC108259863,LOC103027887,LOC107700241,LOC107548473,LOC108437049,LOC107746368,LOC107596136 coding downstream 81345 16908561 ~ 16927179 (-)
nfkbib nfkbib coding downstream 118011 16883148 ~ 16890513 (-)
tppp2 LOC108259867,LOC108437044,LOC107548470,LOC107700244,LOC107746373,LOC107693436 coding downstream 136510 16867453 ~ 16872014 (-)
nccrp1 nccrp1 coding upstream 1640 17035458 ~ 17039552 (-)
LOC117596250 LOC108259908,LOC108260251 coding upstream 12772 17046590 ~ 17052637 (-)
LOC117596251 NA coding upstream 21765 17055583 ~ 17057882 (-)
mark4a mark4a,LOC108444027,LOC107700234,LOC107746361,LOC107596145,LOC107693438,LOC105006905,LOC102194939,LOC100708718,LOC101472647 coding upstream 36598 17070416 ~ 17097720 (-)
exoc3l2a LOC108260004,LOC108444026 coding upstream 79289 17113107 ~ 17131362 (-)
G388440 NA non-coding downstream 19509 16978449 ~ 16989015 (-)
G388406 NA non-coding downstream 57473 16945913 ~ 16951051 (-)
G388405 NA non-coding downstream 57988 16948975 ~ 16950536 (-)
G388400 NA non-coding downstream 158120 16843993 ~ 16850404 (-)
G388408 apoa4 non-coding downstream 170476 16829748 ~ 16838048 (-)
G388692 NA non-coding upstream 168968 17202786 ~ 17202992 (-)
G388698 LOC100304549,LOC100690460,LOC100219516,LOC106514001 non-coding upstream 248282 17282100 ~ 17284601 (-)
G388709 NA non-coding upstream 309261 17343079 ~ 17355359 (-)
G388754 NA non-coding upstream 376185 17410003 ~ 17411908 (-)
G388785 NA non-coding upstream 518377 17552195 ~ 17552678 (-)
crx crx other downstream 38498 16965966 ~ 16970026 (-)
fxyd2 NA other downstream 245048 16758240 ~ 16763476 (-)
LOC113531235 NA other downstream 627737 16363494 ~ 16380787 (-)
gltpd2 LOC108260402 other downstream 1120465 15882338 ~ 15888059 (-)
nrgna NA other downstream 1981655 15018893 ~ 15026869 (-)
G388705 nono,LOC103047741,LOC107672625,LOC107741185,LOC107756548 other upstream 256526 17290344 ~ 17328020 (-)
LOC113524239 NA other upstream 501609 17535427 ~ 17544583 (-)
LOC117596207 LOC108262004,LOC108262359,LOC108260034,LOC108260038 other upstream 634550 17668368 ~ 17727825 (-)
G389092 NA other upstream 841097 17874915 ~ 18277958 (-)
smarca1 LOC108260009,LOC103034185,LOC105028962,LOC106603320,LOC106567799 other upstream 1039894 18073712 ~ 18094773 (-)

Expression


Co-expression Network