smarca1 (LOC108260009,LOC103034185,LOC105028962,LOC106603320,LOC106567799)


Basic Information

Item Value
gene id smarca1
gene name LOC108260009,LOC103034185,LOC105028962,LOC106603320,LOC106567799
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047621.1
NCBI id CM018567.1
chromosome length 18889892
location 18073712 ~ 18094773 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU461314
AAAAGGGGGCGTATGCCAGGCATGTAGAGTCTGGTGTTGacgtttgttgttgttgttgtagttttatttttatttttattttattttaaaactcgATTTCTGGATTTAATATCTCATGAAAAGCAGTGCGCGGTGTGCACAAAATGTCTGACGAAGAGCTGCCGTCCACTTCCGGCGAGCGCGCGGGCGAAAAGgagcaggaTCGTCCGTTCCAGCTGGCTCCGCCTCCAAAAGCCGCGCTGAAAGAAGCAACAGTGGAtcctgagtatgaagaaaaaagaaaaGCGGATCGGGCGAACAGGTTtgagtttttattaaaacagacGGAGCTCTT
>XM_034300753.1
CGTTGAAAAGGGGGCGTATGCCAGGCATGTAGAGTCTGGTGTTGacgtttgttgttgttgttgtagttttatttttatttttattttattttaaaactcgATTTCTGGATTTAATATCTCATGAAAAGCAGTGCGCGGTGTGCACAAAATGTCTGACGAAGAGCTGCCGTCCACTTCCGGCGAGCGCGCGGGCGAAAAGgagcaggaTCGTCCGTTCCAGCTGGCTCCGCCTCCAAAAGCCGCGCTGAAAGAAGCAACAGTGGAtcctgagtatgaagaaaaaagaaaaGCGGATCGGGCGAACAGGTTtgagtttttattaaaacagacGGAGCTCTTTTTCGGCTCTCACTCTTTCATTCAGCTCATGAGTGTAAAATCTCCCACGCCTCCTGAAAAGGACTCGGCCTCACCTCGAGTTAAACCGGGAAAACAGAGCCTGCTGTCAGTGGGGGATAATCGTCATCGGCGTACGGAgcaggaggaagatgaggagcTGCTGTCAGAGAGCAGAAAGGCCACCAACATCCTCGTCCGCTTCGAGGAGTCACCGTCATATGTGAAGAACGGCGCTCTGAGAGATTATCAGATCAGAGGACTGAACTGGATGATTTCTCTCTATGAGAACGGCATCAACGGCATCCTGGCTGATGAAATGggtttgGGGAAGACCCTGCAGACGATAGCGTTACTCGGGTATCTGAAGCACTACAGGAACATCCCCGGCCCTCACATGGTCCTAGTGCCCAAGTCCACGCTGCACAACTGGATGAACGAGTTTAAACGCTGGGTTCCGTCTCTGAGAGCCGTCTGTCTGATCGGGGACAAGGACGCGCGAGCAGCGTTTATCCGTGACGTGATGATGCCGGGTGAGTGGGACGTGTGTGTGACGTCGTATGAGATGGTGATCCGAGAGAAGTCGGTGTTTAAGAAGTTTAACTGGAGGTACCTGGTGATTGACGAGGCTCATCGCATCAAAAACGAAAAGTCCAAGTTATCTGAAATTGTTCGCGAGTTTAAGACGACGAATCGTCTTTTACTGACCGGGACTCCGTTACAGAACAACCTGCACGAGCTCTGGTCTCTACTCAACTTCCTGCTTCCAGACGTGTTTAACTCCGCCTCTgactTTGATTCATGGTTTGATACAAACAACTGTCTGGGTGATCAGAAGCTGGTGGAGAGACTGCACgcgGTGCTGCGTCCGTTCCTGCTTCGTCGGATCAAACGGGAAGTGGAGAAGAGTCTTCCTCCCAAGAAGGAAGTGAAGATCTACCTGGGTCTGAGTAAAATGCAGAGAGAATGGTACACACGCATCCTGATGAAGGACATCGACATCCTGAACTCGGCGggtaaaatggataaaatgcgTCTGTTGAACATCCTGATGCAGCTGCGGAAGTGCTGTAATCACCCGTACCTGTTCGACGGAGCTGAGCCGGGACCGCCGTACACCACCGACACACACCTCGTCACCAACAGCGGCAAGATGCTCGCGCTCGACAAACTGCTGCCCAAACTCCACGAGCaaggttccCGGGTGTTGATTTTCAGTCAGATGACGCGTGTGCTGGACATTCTGGAGGATTACTGCATGTGGAGAGGATACGAGTACTGCAGACTGGACGGAAACACGCCACACGAGGACCGACAGCAAGCGATCGAAATGTACAACGCTTCAGACAGCACGAAGTTTATCTTCATGTTGAGCACTCGCGCAGGAGGACTCGGGATCAATCTGGCAACCGCCGATGTCGTCATACTGTACGATTCGGACTGGAACCCGCAAGTCGACCTGCAGGCGatgGATCGCGCTCACAGGATCGGTCAGAAGAAGCCTGTCCGAGTGTTTCGACTCATCACGGAGAACACAGTGGAGGAACGGATCGTCGAGAGAGCGGAGATGAAGCTACGTCTCGACTCCATAGTCATCCAgcaagggcgTTTAATTGAGCAGCAGAATAAACTGGGGAAGGACGAGATGCTGCAGATGATCAGACACGGAGCGACGCACGTCTTCGCCTCCAAAGACAGCGAGCTGACGGACGAGGACATCGACACCATCCTGGAGAGAGGAGCCAAAAAGACAGCGGAGATGAATGAGAGGATGCAGAAGCTGGGCGAGAGCTCACTGAGAAACTTCACCATGGATACGGGCACCACGGAAACCAGCCTGTACAACTTCGAGGGTGAGGATTACAGAGAGAAGCAGAAGatgaATATGATGGAGTGGATCGAGCCtcctaagagagagagaaaagcaaactATGCTGTGGATGCTTATTTCAGGGAGGCGCTCCGAGTCAGCGAGCCCAGAGCTCcaaaggctcCTCGTCCTCCTAAGCAGCCTAATATTCAGGATTTTCAGTTTTTCCCTCCACGTCTGTTTGAGCTGCTGGAGATGGAGATACTGCATTACAGGAAGACCATTGGAtacaaggttccGAGGGCCTCTGACATCCCGAACGCAGCTCAGGTGCAGAAGGAGGAACAGAAGAAGATCGATGAAGCAGAACCTCTCACACCTGAGGAGAccgaggagaaagagagactgctCACACAGggttTTACGAGCTGGAACAAGCGAGACTTTAACCAGTTCATCAAAGCGAATGAAAAATACGGCCGAGACGACATAGACAGCATCGCCCGCGAGGTGGAGGGCAAAACACCTGAGGAGGTCATCGAATattcagctgtgttcTGGGAGCGCTGTAATGAACTGCAGGACATTGAGAAGATCATGGCTCAGATCGAGAGAGGAGAAGCTCGAATCCAGAGACGCATCAGCATTAAAAAAGCCCTCGATGTGAAGatcgCACGCTATAAAGCTCCGTTCCACCAGTTGCGTATCCAGTACGGCACTAATAAAGGGAAGAACTACACGGAGGAGGAGGATCGCTTTCTGATCTGCATGCTGCACAAGATGGGCTTCGATAAGGAGAACGTGTACGAGGAGCTGCGGCAGTGTGTGAGGAACACACCCCAGTTCCGCTTCGACTGGTTCATCAAGTCCAGGACGGccatggaGCTTCAGAgacgctgtaacacactcatCTCTCTGATCGAGAAAGAAAACACGGAGAtcgaggagaaagaaaaagcggagaaaaagaaaagagctcCCAAAGGACAATCAGCCCACAAGCGTAAAGCCGAAGCCTCATCTGACAGGAAGGAGAAGAAGTCGAAGACCTGATTTggggattttctttttttctctctcggtAACGGAGTACGAAGTTTCGTCGCACAGCAGCTACACGCAGAAATCTAACGTGATATTCAGTGAAGTTCGGCGTTATCTCTGAAGCACAGGAGAaaaatgtaccaaaaaaaacagaatcattTCGTTACGAGTCGTTTTTCTCGTCTTTCTCTTTACACACATTCGATGCGCTTTTTTGAGAGTTGAAATCACGATTTATTTATTGCATGCTGAAATGCAATTCCaggttttttgtttaattatatattcttttatctgtttttatacAATACAGTATTTTTCTCACGTGCTCTGCTTTGGCTTTATAAGCTCCTCAGTGATTGGGGATAATTTTTCTTAATCGCTCAGTTATCTGTGTGGGtcagtttcattttaataaaaaattcctacgttttatttcacacagtgttttatgctCGAGTTTTACTTAAACAAGCTTCTCACAACTAAAACATAATTTGTTATGTGTCCTCTGAAGTGCtgatatagttttattttttacattttaaataagcaGGAAGTAGTCGCATTGTTAGCTAAAATAGATCTCAAGTTATAAACATGAACCtgattttatagtgtttatattttttacttaataaaaacTACGAAATGTCGCCAAATTCGCACTTGCACTAGCGTGATAATTACGTAGCTATCGAGTACCAAGCTACTGAATATCTTATATCTTTCTGTTTGGAtctaaaaatactgtataaaaacttttaaatacCAAACATCTCTATCAAGCGTTCTTTATCCTTCTGGAGAAATATTGTAGCTAGCAATGAGACTgttttctgggaaaaaaaacccaaaaaaacacaaacaacaaaagtTATAATCGTTTCTGatccttttatttttccctgaGACGTTTAGCGTAACTAAAACGACTTCACTCTTAAAGATCATTTACGTTACTGTTCAGCATTAATCCAGATTATGTTCATCTTTATATACGTCTGAGTTCAgtgttattaaaaaagaatcctaaatgata

Function

NR:

description
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5

GO: NA

KEGG:

id description
K11727 SMARCA1, SNF2L; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 1

RNA

RNA id representative length rna type GC content exon number start site end site
TU461314 False 334 lncRNA 0.46 3 18091335 18094768
XM_034300753.1 True 4232 mRNA 0.47 26 18073712 18094773

Neighbor

gene id symbol gene type direction distance location
tenm1 NA coding downstream 80664 17849347 ~ 17993048 (-)
iqcd NA coding downstream 291060 17778461 ~ 17782652 (-)
LOC117596209 LOC108262359,LOC108262004,LOC108260034,LOC108260038 coding downstream 324522 17744167 ~ 17749190 (-)
LOC113544925 NA coding downstream 379238 17691263 ~ 17694474 (-)
uprt uprt,LOC107733222 coding downstream 439651 17627530 ~ 17634061 (-)
arhgef9a arhgef9,arhgef9a,LOC107741200,LOC107557118,LOC107597261 coding upstream 26247 18121020 ~ 18152194 (-)
amer1 amer1 coding upstream 64053 18158826 ~ 18164016 (-)
mtmr8 mtmr8,LOC108444279 coding upstream 71847 18166620 ~ 18177197 (-)
zc4h2 zc4h2,LOC107663226,LOC107557113 coding upstream 93832 18188605 ~ 18194488 (-)
stard8 stard8 coding upstream 222976 18317749 ~ 18351286 (-)
G389067 NA non-coding downstream 258551 17804784 ~ 17815161 (-)
G389065 NA non-coding downstream 272559 17798882 ~ 17801153 (-)
G389064 NA non-coding downstream 275891 17797397 ~ 17797821 (-)
G389062 NA non-coding downstream 283406 17790027 ~ 17790306 (-)
G388875 NA non-coding downstream 314127 17759160 ~ 17759585 (-)
G389137 NA non-coding upstream 103656 18198429 ~ 18232888 (-)
G389158 NA non-coding upstream 132201 18226974 ~ 18227472 (-)
G389159 NA non-coding upstream 141251 18236024 ~ 18238507 (-)
G389095 NA non-coding upstream 164124 18258897 ~ 18392275 (-)
G389097 msn,LOC108411308,LOC104934336,LOC101173881,LOC105927781 non-coding upstream 175387 18270160 ~ 18271974 (-)
LOC117596207 LOC108262004,LOC108262359,LOC108260034,LOC108260038 other downstream 345887 17668368 ~ 17727825 (-)
LOC113524239 NA other downstream 529129 17535427 ~ 17544583 (-)
G388705 nono,LOC103047741,LOC107672625,LOC107741185,LOC107756548 other downstream 745692 17290344 ~ 17328020 (-)
crx crx other downstream 1103686 16965966 ~ 16970026 (-)
fxyd2 NA other downstream 1310236 16758240 ~ 16763476 (-)
las1l las1l other upstream 121444 18216217 ~ 18230970 (-)
fdx1b LOC108259761 other upstream 445557 18540330 ~ 18630565 (-)
efnb1 efnb1 other upstream 600163 18694936 ~ 18831812 (-)

Expression


Co-expression Network