G388875


Basic Information

Item Value
gene id G388875
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047621.1
NCBI id CM018567.1
chromosome length 18889892
location 17759160 ~ 17759585 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU460991
CCACTTATCTGTCTCTTTACCTGTCTAATTGTCTTCTTGCTGACTTGTCTACCTCTCTACCTGTCCACCTGTCTTTCTGTCCAGACGCCACAGACCAGGTGTTTAAAATAATGCATGTGGGATTTTTGCACAAGCACAGTgaatcataaaaaaatgtaaaaagttaaGGAGGTAACTGAGGGTAACAAGGGGTAACTACAGGTAACTGAGGGTAACCAGGGGTAACTACAGGTAACTGAGGGTAACCAGGGGTAACTACAGGTAACTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU460991 True 268 lncRNA 0.43 2 17759160 17759585

Neighbor

gene id symbol gene type direction distance location
LOC117596209 LOC108262359,LOC108262004,LOC108260034,LOC108260038 coding downstream 9970 17744167 ~ 17749190 (-)
LOC113544925 NA coding downstream 64686 17691263 ~ 17694474 (-)
uprt uprt,LOC107733222 coding downstream 125099 17627530 ~ 17634061 (-)
LOC117595671 LOC108262359,LOC108260034,LOC108262004,LOC108260038 coding downstream 232824 17520856 ~ 17526336 (-)
LOC113531111 LOC108262359,LOC108262004,LOC108260034,LOC108260038 coding downstream 244042 17506787 ~ 17515118 (-)
iqcd NA coding upstream 18876 17778461 ~ 17782652 (-)
tenm1 NA coding upstream 89762 17849347 ~ 17993048 (-)
arhgef9a arhgef9,arhgef9a,LOC107741200,LOC107557118,LOC107597261 coding upstream 361435 18121020 ~ 18152194 (-)
amer1 amer1 coding upstream 399241 18158826 ~ 18164016 (-)
mtmr8 mtmr8,LOC108444279 coding upstream 407035 18166620 ~ 18177197 (-)
G388874 NA non-coding downstream 1830 17755586 ~ 17757330 (-)
G388865 NA non-coding downstream 32721 17706841 ~ 17726439 (-)
G388824 NA non-coding downstream 117991 17620936 ~ 17641169 (-)
G388814 NA non-coding downstream 138367 17601942 ~ 17620793 (-)
G388757 NA non-coding downstream 149726 17604526 ~ 17609434 (-)
G389062 NA non-coding upstream 30442 17790027 ~ 17790306 (-)
G389064 NA non-coding upstream 37812 17797397 ~ 17797821 (-)
G389065 NA non-coding upstream 39297 17798882 ~ 17801153 (-)
G389067 NA non-coding upstream 45199 17804784 ~ 17815161 (-)
G389137 NA non-coding upstream 438844 18198429 ~ 18232888 (-)
LOC117596207 LOC108262004,LOC108262359,LOC108260034,LOC108260038 other downstream 31335 17668368 ~ 17727825 (-)
LOC113524239 NA other downstream 214577 17535427 ~ 17544583 (-)
G388705 nono,LOC103047741,LOC107672625,LOC107741185,LOC107756548 other downstream 431140 17290344 ~ 17328020 (-)
crx crx other downstream 789134 16965966 ~ 16970026 (-)
fxyd2 NA other downstream 995684 16758240 ~ 16763476 (-)
G389092 NA other upstream 115330 17874915 ~ 18277958 (-)
smarca1 LOC108260009,LOC103034185,LOC105028962,LOC106603320,LOC106567799 other upstream 314127 18073712 ~ 18094773 (-)
las1l las1l other upstream 456632 18216217 ~ 18230970 (-)
fdx1b LOC108259761 other upstream 780745 18540330 ~ 18630565 (-)
efnb1 efnb1 other upstream 935351 18694936 ~ 18831812 (-)

Expression


Co-expression Network