LOC113544925


Basic Information

Item Value
gene id LOC113544925
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047621.1
NCBI id CM018567.1
chromosome length 18889892
location 17691263 ~ 17694474 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034300482.1
TTTTGAAGAGCGAGTGGACCCAGCGGAGGATGTCATTCCTGACGAGACTGTGAATACACCACTCTCGCCTTCACCTGCATCTCACACAGGAAGTGGACGCAGacgtgagaaaaacagtgaaaaagaaCCTGTGGCAAAGAGAGCCAAAGCAGATAAGCAGCCCACTCTGTCATGGAACACAGAGACTGATGTTGACATGGCTCCACAGGCTCTGAGATTCCTGCCCACACGGCAACCTGGACCACAGCTAGACCCAAGACCCTGTGAGGCACACACTCCCATGAGTctcttcaaaatgtttttttcttcaactgcTGTGTCAACTCTGTGTCGAAACACCAATGCTCAGGCTGCCAGGGCACGTGCAAAgggccataaatataaatggacaGACGTCAGCATCAGTGAGCTGTACTGTTACATCGGGCTACTCTTCTACATGGCCATGGTGAAGTTGAGGTCCATCAAAGACTACTGGCGGCACGATAGTGTTTTCTCTGTTCCTTTTCCTGCCACAATCATGTCAAGGGATAGATACTGCACCATTTCATGGAATCTGCACATGAGTCACCCAGATGCAGACAAGGACAATGACCGAAAGAGGGGCACAGCTGAACACGACCGTCTTTTCAGGATCAGACCCCTCATGGACACTATCCGGCATGCATGTAAGGCCATCTATCATCCAAGACAAAATTTGGCAGTGGATGAAAGAATGGTGGCATGCAAAGCAAACACAGGAATGACTCAGTACATGAAAGCCAAACCAACCAGGTGGGGCTTCAAGTTGTTTGTTCTTGCAGACTCATCAAatggatatactgtagattttgcTGTGTACACAGGAAAGAACAACTTTCCCACAGACCATGGACTGTCATATGATCTGTTGACCTGTCTGATCAGCTGTTACAGTACTACACCACGCAGCACAAAACAATGAAGTGGTACAGAAAGCTATTTCTACACTTCTTGGACATTGCTGCCACCAATGCCTTTATTGTACACAAAGAGCTTTACGGCACCATGAGCCACAAGGAGTTTATGATAGAACTAATTGCAGAGCTCTGTGGCGTGTCACAGAAAATAACACCAAAGCTGACCAGTGTTGACCATGTGCCAGTTCCAGGAGCTGAGCAGGCCTCAGATGCCACTGCTGGTCCCCGGATCTGTGTGCTTTGCAAAGCAAAGCATGGTAAGAGGCAGGACACTCCTTGGAAATGCCAGGCATGTGATGTTCACTTGTGTGTTCAGCTGAAAAGGAACTGTTTCCTAGAGTGGCACAAAGATGTATAGCTGTATAGATGTATAGCTGTTCAATTCTGTGGGCTTCAAAGAGTGGGCTTTTACTATAttctaaataaactacaaacaaaaaatatataaatttcttttgtcctcacaTTCTTTTTCATAGCACTTCCCTCTCAGCCACATTCCTGACTCAACGGCTCATTATGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034300482.1 True 1461 mRNA 0.46 3 17691263 17694474

Neighbor

gene id symbol gene type direction distance location
uprt uprt,LOC107733222 coding downstream 57202 17627530 ~ 17634061 (-)
LOC117595671 LOC108262359,LOC108260034,LOC108262004,LOC108260038 coding downstream 164927 17520856 ~ 17526336 (-)
LOC113531111 LOC108262359,LOC108262004,LOC108260034,LOC108260038 coding downstream 176145 17506787 ~ 17515118 (-)
LOC113531290 LOC108260034,LOC108262004,LOC108260038 coding downstream 208300 17467743 ~ 17482963 (-)
si:dkey-237j10.2 LOC108260035 coding downstream 237853 17449753 ~ 17453410 (-)
LOC117596209 LOC108262359,LOC108262004,LOC108260034,LOC108260038 coding upstream 49693 17744167 ~ 17749190 (-)
iqcd NA coding upstream 83987 17778461 ~ 17782652 (-)
tenm1 NA coding upstream 154873 17849347 ~ 17993048 (-)
arhgef9a arhgef9,arhgef9a,LOC107741200,LOC107557118,LOC107597261 coding upstream 426546 18121020 ~ 18152194 (-)
amer1 amer1 coding upstream 464352 18158826 ~ 18164016 (-)
G388824 NA non-coding downstream 50094 17620936 ~ 17641169 (-)
G388814 NA non-coding downstream 70470 17601942 ~ 17620793 (-)
G388757 NA non-coding downstream 81829 17604526 ~ 17609434 (-)
G388781 LOC108443758 non-coding downstream 101056 17569615 ~ 17590207 (-)
G388785 NA non-coding downstream 138585 17552195 ~ 17552678 (-)
G388865 NA non-coding upstream 12367 17706841 ~ 17726439 (-)
G388874 NA non-coding upstream 61112 17755586 ~ 17757330 (-)
G388875 NA non-coding upstream 64686 17759160 ~ 17759585 (-)
G389062 NA non-coding upstream 95553 17790027 ~ 17790306 (-)
G389064 NA non-coding upstream 102923 17797397 ~ 17797821 (-)
LOC113524239 NA other downstream 146680 17535427 ~ 17544583 (-)
G388705 nono,LOC103047741,LOC107672625,LOC107741185,LOC107756548 other downstream 363243 17290344 ~ 17328020 (-)
crx crx other downstream 721237 16965966 ~ 16970026 (-)
fxyd2 NA other downstream 927787 16758240 ~ 16763476 (-)
LOC113531235 NA other downstream 1310476 16363494 ~ 16380787 (-)
G389092 NA other upstream 180441 17874915 ~ 18277958 (-)
smarca1 LOC108260009,LOC103034185,LOC105028962,LOC106603320,LOC106567799 other upstream 379238 18073712 ~ 18094773 (-)
las1l las1l other upstream 521743 18216217 ~ 18230970 (-)
fdx1b LOC108259761 other upstream 845856 18540330 ~ 18630565 (-)
efnb1 efnb1 other upstream 1000462 18694936 ~ 18831812 (-)

Expression


Co-expression Network