LOC113531111 (LOC108262359,LOC108262004,LOC108260034,LOC108260038)


Basic Information

Item Value
gene id LOC113531111
gene name LOC108262359,LOC108262004,LOC108260034,LOC108260038
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047621.1
NCBI id CM018567.1
chromosome length 18889892
location 17506787 ~ 17515118 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026921612.2
TCTCTGTCACTGTTAAGTGGAGGACTTACAGGATTATTGAGAACATCACAATGCACTTAGGACAGaagtcatttctgttttttactATTTGCATCGCTTCATTTCTTGGGTTTAATTACTTCAGCTACAACTCCTCTTGGTTCAGtGGTGTGTTGGAGTGCAGACCGATTGTgggaaaaaaacagcatgttagTATGGACTTAATCTTTCCTGCAGGGACGTCATGCAAGCAGCCCAGTGTAAGTAATAGtcggGCAGATGTTGCCACGACGACCCAGTGGTTAGCTCCGATTGTATGGGAGGAAACGTTTGATCTGACAGTGATTGATGGCATCTACAAACAACAGAACATCACTGTGGCAACCACCGTCTTCGCTCTGGGGAAGTATGTGCGTTTCCTGAAGGACTTCCTAGAGTCGGCGGAGCAGCACTTCATGGTGGGCTACCGAGTGCATTATTACCTGTTTACAGATCACCCGGACAAAGTTCCCGTGGTAACACTGGGGGAGGGGCGTCAGTTGACCGTGATAAAAACAGCAAGCTCAAACCGCTGGCAGGAAAACTCGCTACGCAGGATGGGGATGATTGAGAAGCTCATTGAAGAGAAGCTCAGGAACAAGGCAGACTACATATTCAGCCTCGACGTCGACTCCAAATTCTATGCTCACTGGGGGGCGGAGTCTCTGGGCGATCTTGTTGGCGTGCTGCATGCCTGGCTTTTTGGAACATCTCGGGAACAGTTCACGTACGAGAGGCGTCCTGAATCTCAGGCCTTCATACCTTTAGAAGAAGGAGACTACTACTACGGAGGGGCCGTGATCGGAGGGCGCCTCGACAAAGTGCTCAAGCTGGCGAAGACGTGCCGCATGCAGCTGGAAGCGGACCGAGCAAATCAAATCGAAGCGGTATGGCAGGAAGAGTCTCACCTGAACAAGTACTTCCTGTACAACAAACCCACCAAGTTGCTCTCACCTGAATACCTGTGGGATGACAGAAAAGAGAAACCCACCTTCATGAAAGTGGTGCGTTTCTCACAGGTGGTCAAAAACTATGCTGAGATTCGACCCAACCCTTAATACACACTGTACCTCAGCAGGAATTTATAGGTTTTCACCAAATGAGATTTGTTTTTCTTGATGCGAATCACCTGAATTATCATCCCATTGATCCCAAATCCTAATCCCCTCTGATGGGTTTAacagaatataaacaaactaagcTCTCTCGTTTAATTACTATTATCTCTCAGGTTTCATGCAGAGAACCCCTGACTCCTCCACCACATCCTTCATGGCTAGTTCCTTCacaacatttacagttaaatggAAACCTTTCTGTTAGCCTTCCTACAACATTTCTGGAACATTTTTCATTCTAAGCATTTGATTGTAAACATTCTCAGAACATCCAGAAacatttgtgaatgtttttggAATCAAAAGTTCctaaaaacatttagaaaaggTTTAGAAAAGGTAAAATTGTAAGCTGAACTAATATAAGATGATACTTATgctatttaagcaatatcgcacgagcaagagtgcagttatactgaagaTATCCACGCTcttgcgatattgcttttacaacagttctataaacaagaaattaatactgAGTTACTAGGTTGGTAACAAATCataatatatattgtgtattaatACTAATATAAAATGTGATGATATTTTGCTTGTTGATGAAGCTTTGTTacaataaagcaataaagaaaTTCTAATTCTG
>XM_034300518.1
TCTCTGTCACTGTTAAGTGGAGGACTTACAGGATTATTGAGAACATCACAATGCACTTAGGACAGaagtcatttctgttttttactATTTGCATCGCTTCATTTCTTGGGTTTAATTACTTCAGCTACAACTCCTCTTGGTTCAGtGGTGTGTTGGAGTGCAGACCGATTGTgggaaaaaaacagcatgttagTATGGACTTAATCTTTCCTGCAGGGACGTCATGCAAGCAGCCCAGTGTAAGTAATAGtcggGCAGATGTTGCCACGACGACCCAGTGGTTAGCTCCGATTGTATGGGAGGAAACGTTTGATCTGACAGTGATTGATGGCATCTACAAACAACAGAACATCACTGTGGCAACCACCGTCTTCGCTCTGGGGAAGTACGTCATGACACCTTTCAAGTATTGTGGGTATGTGCGTTTCCTGAAGGACTTCCTAGAGTCGGCGGAGCAGCACTTCATGGTGGGCTACCGAGTGCATTATTACCTGTTTACAGATCACCCGGACAAAGTTCCCGTGGTAACACTGGGGGAGGGGCGTCAGTTGACCGTGATAAAAACAGCAAGCTCAAACCGCTGGCAGGAAAACTCGCTACGCAGGATGGGGATGATTGAGAAGCTCATTGAAGAGAAGCTCAGGAACAAGGCAGACTACATATTCAGCCTCGACGTCGACTCCAAATTCTATGCTCACTGGGGGGCGGAGTCTCTGGGCGATCTTGTTGGCGTGCTGCATGCCTGGCTTTTTGGAACATCTCGGGAACAGTTCACGTACGAGAGGCGTCCTGAATCTCAGGCCTTCATACCTTTAGAAGAAGGAGACTACTACTACGGAGGGGCCGTGATCGGAGGGCGCCTCGACAAAGTGCTCAAGCTGGCGAAGACGTGCCGCATGCAGCTGGAAGCGGACCGAGCAAATCAAATCGAAGCGGTATGGCAGGAAGAGTCTCACCTGAACAAGTACTTCCTGTACAACAAACCCACCAAGTTGCTCTCACCTGAATACCTGTGGGATGACAGAAAAGAGAAACCCACCTTCATGAAAGTGGTGCGTTTCTCACAGGTGGTCAAAAACTATGCTGAGATTCGACCCAACCCTTAATACACACTGTACCTCAGCAGGAATTTATAGGTTTTCACCAAATGAGATTTGTTTTTCTTGATGCGAATCACCTGAATTATCATCCCATTGATCCCAAATCCTAATCCCCTCTGATGGGTTTAacagaatataaacaaactaagcTCTCTCGTTTAATTACTATTATCTCTCAGGTTTCATGCAGAGAACCCCTGACTCCTCCACCACATCCTTCATGGCTAGTTCCTTCacaacatttacagttaaatggAAACCTTTCTGTTAGCCTTCCTACAACATTTCTGGAACATTTTTCATTCTAAGCATTTGATTGTAAACATTCTCAGAACATCCAGAAacatttgtgaatgtttttggAATCAAAAGTTCctaaaaacatttagaaaaggTTTAGAAAAGGTAAAATTGTAAGCTGAACTAATATAAGATGATACTTATgctatttaagcaatatcgcacgagcaagagtgcagttatactgaagaTATCCACGCTcttgcgatattgcttttacaacagttctataaacaagaaattaatactgAGTTACTAGGTTGGTAACAAATCataatatatattgtgtattaatACTAATATAAAATGTGATGATATTTTGCTTGTTGATGAAGCTTTGTTacaataaagcaataaagaaaTTCTAATTCTG
>XM_034300519.1
TCTCTGTCACTGTTAAGTGGAGGACTTACAGGATTATTGAGAACATCACAATGCACTTAGGACAGaagtcatttctgttttttactATTTGCATCGCTTCATTTCTTGGGTTTAATTACTTCAGCTACAACTCCTCTTGGTTCAGtGGTGTGTTGGAGTGCAGACCGATTGTGACGTCATGCAAGCAGCCCAGTGTAAGTAATAGtcggGCAGATGTTGCCACGACGACCCAGTGGTTAGCTCCGATTGTATGGGAGGAAACGTTTGATCTGACAGTGATTGATGGCATCTACAAACAACAGAACATCACTGTGGCAACCACCGTCTTCGCTCTGGGGAAGTACGTCATGACACCTTTCAAGTATTGTGGGTATGTGCGTTTCCTGAAGGACTTCCTAGAGTCGGCGGAGCAGCACTTCATGGTGGGCTACCGAGTGCATTATTACCTGTTTACAGATCACCCGGACAAAGTTCCCGTGGTAACACTGGGGGAGGGGCGTCAGTTGACCGTGATAAAAACAGCAAGCTCAAACCGCTGGCAGGAAAACTCGCTACGCAGGATGGGGATGATTGAGAAGCTCATTGAAGAGAAGCTCAGGAACAAGGCAGACTACATATTCAGCCTCGACGTCGACTCCAAATTCTATGCTCACTGGGGGGCGGAGTCTCTGGGCGATCTTGTTGGCGTGCTGCATGCCTGGCTTTTTGGAACATCTCGGGAACAGTTCACGTACGAGAGGCGTCCTGAATCTCAGGCCTTCATACCTTTAGAAGAAGGAGACTACTACTACGGAGGGGCCGTGATCGGAGGGCGCCTCGACAAAGTGCTCAAGCTGGCGAAGACGTGCCGCATGCAGCTGGAAGCGGACCGAGCAAATCAAATCGAAGCGGTATGGCAGGAAGAGTCTCACCTGAACAAGTACTTCCTGTACAACAAACCCACCAAGTTGCTCTCACCTGAATACCTGTGGGATGACAGAAAAGAGAAACCCACCTTCATGAAAGTGGTGCGTTTCTCACAGGTGGTCAAAAACTATGCTGAGATTCGACCCAACCCTTAATACACACTGTACCTCAGCAGGAATTTATAGGTTTTCACCAAATGAGATTTGTTTTTCTTGATGCGAATCACCTGAATTATCATCCCATTGATCCCAAATCCTAATCCCCTCTGATGGGTTTAacagaatataaacaaactaagcTCTCTCGTTTAATTACTATTATCTCTCAGGTTTCATGCAGAGAACCCCTGACTCCTCCACCACATCCTTCATGGCTAGTTCCTTCacaacatttacagttaaatggAAACCTTTCTGTTAGCCTTCCTACAACATTTCTGGAACATTTTTCATTCTAAGCATTTGATTGTAAACATTCTCAGAACATCCAGAAacatttgtgaatgtttttggAATCAAAAGTTCctaaaaacatttagaaaaggTTTAGAAAAGGTAAAATTGTAAGCTGAACTAATATAAGATGATACTTATgctatttaagcaatatcgcacgagcaagagtgcagttatactgaagaTATCCACGCTcttgcgatattgcttttacaacagttctataaacaagaaattaatactgAGTTACTAGGTTGGTAACAAATCataatatatattgtgtattaatACTAATATAAAATGTGATGATATTTTGCTTGTTGATGAAGCTTTGTTacaataaagcaataaagaaaTTCTAATTCTG
>XM_034300520.1
CGCTTCATTTCTTGGGTTTAATTACTTCAGCTACAACTCCTCTTGGTTCAGtGGTGTGTTGGAGTGCAGACCGATTGTcatgttagTATGGACTTAATCTTTCCTGCAGGGACGTCATGCAAGCAGCCCAGTGTAAGTAATAGtcggGCAGATGTTGCCACGACGACCCAGTGGTTAGCTCCGATTGTATGGGAGGAAACGTTTGATCTGACAGTGATTGATGGCATCTACAAACAACAGAACATCACTGTGGCAACCACCGTCTTCGCTCTGGGGAAGTACGTCATGACACCTTTCAAGTATTGTGGGTATGTGCGTTTCCTGAAGGACTTCCTAGAGTCGGCGGAGCAGCACTTCATGGTGGGCTACCGAGTGCATTATTACCTGTTTACAGATCACCCGGACAAAGTTCCCGTGGTAACACTGGGGGAGGGGCGTCAGTTGACCGTGATAAAAACAGCAAGCTCAAACCGCTGGCAGGAAAACTCGCTACGCAGGATGGGGATGATTGAGAAGCTCATTGAAGAGAAGCTCAGGAACAAGGCAGACTACATATTCAGCCTCGACGTCGACTCCAAATTCTATGCTCACTGGGGGGCGGAGTCTCTGGGCGATCTTGTTGGCGTGCTGCATGCCTGGCTTTTTGGAACATCTCGGGAACAGTTCACGTACGAGAGGCGTCCTGAATCTCAGGCCTTCATACCTTTAGAAGAAGGAGACTACTACTACGGAGGGGCCGTGATCGGAGGGCGCCTCGACAAAGTGCTCAAGCTGGCGAAGACGTGCCGCATGCAGCTGGAAGCGGACCGAGCAAATCAAATCGAAGCGGTATGGCAGGAAGAGTCTCACCTGAACAAGTACTTCCTGTACAACAAACCCACCAAGTTGCTCTCACCTGAATACCTGTGGGATGACAGAAAAGAGAAACCCACCTTCATGAAAGTGGTGCGTTTCTCACAGGTGGTCAAAAACTATGCTGAGATTCGACCCAACCCTTAATACACACTGTACCTCAGCAGGAATTTATAGGTTTTCACCAAATGAGATTTGTTTTTCTTGATGCGAATCACCTGAATTATCATCCCATTGATCCCAAATCCTAATCCCCTCTGATGGGTTTAacagaatataaacaaactaagcTCTCTCGTTTAATTACTATTATCTCTCAGGTTTCATGCAGAGAACCCCTGACTCCTCCACCACATCCTTCATGGCTAGTTCCTTCacaacatttacagttaaatggAAACCTTTCTGTTAGCCTTCCTACAACATTTCTGGAACATTTTTCATTCTAAGCATTTGATTGTAAACATTCTCAGAACATCCAGAAacatttgtgaatgtttttggAATCAAAAGTTCctaaaaacatttagaaaaggTTTAGAAAAGGTAAAATTGTAAGCTGAACTAATATAAGATGATACTTATgctatttaagcaatatcgcacgagcaagagtgcagttatactgaagaTATCCACGCTcttgcgatattgcttttacaacagttctataaacaagaaattaatactgAGTTACTAGGTTGGTAACAAATCataatatatattgtgtattaatACTAATATAAAATGTGATGATATTTTGCTTGTTGATGAAGCTTTGTTacaataaagcaataaagaaaTTCTAATTCTG

Function

GO:

id name namespace
GO:0016740 transferase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026921612.2 False 1743 mRNA 0.43 7 17506787 17515118
XM_034300518.1 True 1773 mRNA 0.43 7 17506787 17515118
XM_034300519.1 False 1728 mRNA 0.43 6 17506787 17515118
XM_034300520.1 False 1666 mRNA 0.43 7 17506787 17515024

Neighbor

gene id symbol gene type direction distance location
LOC113531290 LOC108260034,LOC108262004,LOC108260038 coding downstream 23824 17467743 ~ 17482963 (-)
si:dkey-237j10.2 LOC108260035 coding downstream 53377 17449753 ~ 17453410 (-)
si:ch211-26b3.4 si:ch211-26b3.4,LOC108260033,LOC108442048,LOC107597246,LOC107756552,LOC107565423,LOC107741180 coding downstream 60481 17412935 ~ 17446306 (-)
apool NA coding downstream 98575 17402784 ~ 17408212 (-)
nono nono,LOC103047741,LOC107672625,LOC107756548,LOC107741185,LOC107597250 coding downstream 178732 17323062 ~ 17328055 (-)
LOC117595671 LOC108262359,LOC108260034,LOC108262004,LOC108260038 coding upstream 5738 17520856 ~ 17526336 (-)
uprt uprt,LOC107733222 coding upstream 112412 17627530 ~ 17634061 (-)
LOC113544925 NA coding upstream 176145 17691263 ~ 17694474 (-)
LOC117596209 LOC108262359,LOC108262004,LOC108260034,LOC108260038 coding upstream 229049 17744167 ~ 17749190 (-)
iqcd NA coding upstream 263343 17778461 ~ 17782652 (-)
G388754 NA non-coding downstream 94879 17410003 ~ 17411908 (-)
G388709 NA non-coding downstream 151428 17343079 ~ 17355359 (-)
G388698 LOC100304549,LOC100690460,LOC100219516,LOC106514001 non-coding downstream 222186 17282100 ~ 17284601 (-)
G388692 NA non-coding downstream 303795 17202786 ~ 17202992 (-)
G388440 NA non-coding downstream 517772 16978449 ~ 16989015 (-)
G388785 NA non-coding upstream 37077 17552195 ~ 17552678 (-)
G388781 LOC108443758 non-coding upstream 54497 17569615 ~ 17590207 (-)
G388814 NA non-coding upstream 86824 17601942 ~ 17620793 (-)
G388757 NA non-coding upstream 89408 17604526 ~ 17609434 (-)
G388824 NA non-coding upstream 105818 17620936 ~ 17641169 (-)
G388705 nono,LOC103047741,LOC107672625,LOC107741185,LOC107756548 other downstream 178767 17290344 ~ 17328020 (-)
crx crx other downstream 536761 16965966 ~ 16970026 (-)
fxyd2 NA other downstream 743311 16758240 ~ 16763476 (-)
LOC113531235 NA other downstream 1126000 16363494 ~ 16380787 (-)
gltpd2 LOC108260402 other downstream 1618728 15882338 ~ 15888059 (-)
LOC113524239 NA other upstream 20309 17535427 ~ 17544583 (-)
LOC117596207 LOC108262004,LOC108262359,LOC108260034,LOC108260038 other upstream 153250 17668368 ~ 17727825 (-)
G389092 NA other upstream 359797 17874915 ~ 18277958 (-)
smarca1 LOC108260009,LOC103034185,LOC105028962,LOC106603320,LOC106567799 other upstream 558594 18073712 ~ 18094773 (-)
las1l las1l other upstream 701099 18216217 ~ 18230970 (-)

Expression


Co-expression Network