nono (nono,LOC103047741,LOC107672625,LOC107756548,LOC107741185,LOC107597250)


Basic Information

Item Value
gene id nono
gene name nono,LOC103047741,LOC107672625,LOC107756548,LOC107741185,LOC107597250
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047621.1
NCBI id CM018567.1
chromosome length 18889892
location 17323062 ~ 17328055 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034300935.1
GAACAGCTacgaatgaactgttactaaaGAAACCAAGTTCGGTTGTGAGTCGCCCCTCCTCTCGTGCTCTTTGTGGTCGAGGCTACTTTTGTGCGTGCGACCggtttttaaaggaatatttacAGCCCGTTAAGATGCAAGGAAACCGAGGAGGCCGTCCCGATCAGCACAACCACGGCCCAGCGAGGCAGCAGCCCAACCTGCAGCACGACAGGAAGCCTCCGGGAACGGACAGCAACGGGCAGCACACGGACGGCGGAGAACAGCCCAGCCCTGATGCTGGTCTGACTATCGACCTGACGAGCTTTAAGAAGCCCGGGGAGAAGACGTACACGCAGCGCAGCCGGCTGTTCGTGGGCAACCTGCCCGCTGGAACCTCTGAAGAAGAAGTGGAGAAGCTCTTCTCTAAATATGGCAAACCCTCCGAGATCTTCATCAACAAGGACCGAGGCTTCGGGTTCATCCGCCTGGAAACCAAGACCCTCGCGGACATCGCCAAAGCCGAGCTTGACGACATGATGTTCCGCGGCCGTCAGATCCGCGTGCGCTTTGCCACTCACGGTGCTGCGCTCTCGGTGAAGAACCTGCCTCAGTTTGTATCCAACGAGCTGCTGGAGGAGGCCTTCTCCATGTTCGGCCCCATCGAGCGCGCCATCGTGATCGTGGACGACCGCGGACGGCCCACGGGGAAGGGCATCGTGGAGTTCGCCAACAAGCCCTCGGCCCGGAAAGCCCTGGACCGCTGCTCTGACGGCGCCTTCCTCCTCACCTCGTTTCCTCGGCCCGTGACGGTGGAGCCGATGGAGCAGTTGGATGAAGACGAAGGATTTCCAGAGAGACTTGTCAGCAAAACCCCACAGTACCAcaaGGAGCCTTGAGCAGCCCCTCAGCGCAGCCCAGCCCGCTCTGCTCGAAAGCAGTCTATGCAGTGCGCCATGCGCTGGAAGGCTctgatggagatggagaagCAGCAGTTTGAGCAGGTGGACAGGAACATCAAGGAGGCGCAGGAGAAACTGGAGCAGGAGATGGAGGCGGCCAGACACGAGCACCAGGTCATGCTCATGAGACAGGatctgTTGAGGAGGCAGGAGGAGCTGAGGCGTATGGAGGAGGCGCACAACCAGGAGGTGCAGAAGAGGAAGCAGCTGGAGCTGCGTCAGGAGGAGGAGCGGCGCCGCAGGGACGAGGAGCTCAGGGCTCACACCGAGGAGCTGATGAGGAGACAGCAAGGCGCTGGAGCAAACTTCGGCgagaagAGGGAGCAGGACATGAGGATGCACATGGGAGGTCAAGGCCTTCCCATGAACAGGACCTCAATGGGAGGAAACCCCGCACCAGGAGGAGCGCCCAACATGGCCGCCAATGAGGGTGCTGGAGGAAACGCAGGTGGACTTCCTCTGCCGTTCCCGCGTCCTGGCCCGCCTGTCGACTACAAACGGCGCCGGTTCTGAGAGCCCAGGACACGACGCGacgcctctct

Function

symbol description
nono Predicted to enable RNA binding activity. Acts upstream of or within central nervous system development; otic vesicle development; and somite development. Predicted to be located in nuclear speck. Predicted to be active in nucleus. Human ortholog(s) of this gene implicated in syndromic X-linked intellectual disability 34. Orthologous to human NONO (non-POU domain containing octamer binding).

NR:

description
PREDICTED: non-POU domain-containing octamer-binding protein-like isoform X1

GO:

id name namespace
GO:0003676 nucleic acid binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG:

id description
K13214 NONO, NRB54; non-POU domain-containing octamer-binding protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034300935.1 True 1483 mRNA 0.60 11 17323062 17328055

Neighbor

gene id symbol gene type direction distance location
aifm1 aifm1 coding downstream 6820 17300524 ~ 17316242 (-)
glra4b glra4b,LOC108259905,LOC108442052,LOC107741187,LOC107565418,LOC107680382 coding downstream 23581 17289073 ~ 17299481 (-)
sptbn4a LOC108259765,LOC108414461,LOC107565414 coding downstream 50455 17242034 ~ 17272607 (-)
micu2 micu2 coding downstream 84109 17227450 ~ 17238953 (-)
nova1 LOC108260001,LOC103044679,LOC108444022,LOC103394980,LOC107596194,LOC105901513,LOC107379798,LOC107655909,LOC107757545,LOC102216529,LOC107746355,LOC103138289 coding downstream 95996 17194315 ~ 17227066 (-)
apool NA coding upstream 74729 17402784 ~ 17408212 (-)
si:ch211-26b3.4 si:ch211-26b3.4,LOC108260033,LOC108442048,LOC107597246,LOC107756552,LOC107565423,LOC107741180 coding upstream 84880 17412935 ~ 17446306 (-)
si:dkey-237j10.2 LOC108260035 coding upstream 121698 17449753 ~ 17453410 (-)
LOC113531290 LOC108260034,LOC108262004,LOC108260038 coding upstream 139688 17467743 ~ 17482963 (-)
LOC113531111 LOC108262359,LOC108262004,LOC108260034,LOC108260038 coding upstream 178732 17506787 ~ 17515118 (-)
G388698 LOC100304549,LOC100690460,LOC100219516,LOC106514001 non-coding downstream 38461 17282100 ~ 17284601 (-)
G388692 NA non-coding downstream 120070 17202786 ~ 17202992 (-)
G388440 NA non-coding downstream 334047 16978449 ~ 16989015 (-)
G388406 NA non-coding downstream 372011 16945913 ~ 16951051 (-)
G388709 NA non-coding upstream 15024 17343079 ~ 17355359 (-)
G388754 NA non-coding upstream 81948 17410003 ~ 17411908 (-)
G388785 NA non-coding upstream 224140 17552195 ~ 17552678 (-)
G388781 LOC108443758 non-coding upstream 241560 17569615 ~ 17590207 (-)
G388814 NA non-coding upstream 273887 17601942 ~ 17620793 (-)
crx crx other downstream 353036 16965966 ~ 16970026 (-)
fxyd2 NA other downstream 559586 16758240 ~ 16763476 (-)
LOC113531235 NA other downstream 942275 16363494 ~ 16380787 (-)
gltpd2 LOC108260402 other downstream 1435003 15882338 ~ 15888059 (-)
nrgna NA other downstream 2296193 15018893 ~ 15026869 (-)
LOC113524239 NA other upstream 207372 17535427 ~ 17544583 (-)
LOC117596207 LOC108262004,LOC108262359,LOC108260034,LOC108260038 other upstream 340313 17668368 ~ 17727825 (-)
G389092 NA other upstream 546860 17874915 ~ 18277958 (-)
smarca1 LOC108260009,LOC103034185,LOC105028962,LOC106603320,LOC106567799 other upstream 745657 18073712 ~ 18094773 (-)
las1l las1l other upstream 888162 18216217 ~ 18230970 (-)

Expression


Co-expression Network