G389092


Basic Information

Item Value
gene id G389092
gene name NA
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047621.1
NCBI id CM018567.1
chromosome length 18889892
location 17874915 ~ 18277958 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU461266
tgtttttttaatactttattgaCAGTTTAAATGAAGACATTCAAAGCAAATATCCTTGTTCTCGATTGGCTAAACAGAAGGCACATGGCACCTGCGGAGCGGCAAACAGAAGATAAACTAATCCAAGATCTCTATCTCTTACATATCAATAACAGTCATGATTATCCGTAAGCTAAAGAATAAACCCGAGATAAAATAACCATATTGCTTCAGTGCAGCAGTTCGCTGCGTTTAACAACAGAACGACGGAAATGTATTAGAGAGGTGTCGTGTATAAATAGCACACACTCGCTAAATGAGGCTAAAATCTacaacaaggaaaaaaacacagctctgCTCTTGCGTGTTTTTCTAATACAGATTTCTTCAAAATAATACTGCAAAGTTtccatatcttaaaaaaaaaacaaaaaacaaaacaaaagcttaGCATTagaataagataaaataaaaactacggtcgaaaaaaattacagttcgATATTTTACTTCGATTGCATTGGCGAATGCAGGGAGCGTCCACAGACCTGCGCTGGTGTCGCGGAGGGGCATCAACGGGgaccacacacactcgcacacacacactcacacacacacacacacacacactcacacatacacagagtttATATGAATGAGGACTGGTGCAAAATATGATTTGCACGGTGATGACCATTAGGGCTGTGATGATAAATATCAGAATGACTATATAATTAAACTTACActtgaatttaatttatttcattgatCATTAAATCAGAAAAATGATACCGTTTGTGTTTTTAGACCTGTAGGAATTATGatgtcacaattttttttttttttaaaaaagcatgaaattTGCTACAAGACTTGTAAAGCCCTTTTAAAGAGGTATAAACTGGAAAAAATCAAACTACAAACATGCTGCTTCTTCAGAATGGCACTGATTGCAAATAATAACCTCAGTGTATAAGGTGAAGTTATTATAGAGTATGTCAGTATACcaaaaaaggaagtgaaaatataacattaacGGCACATGGTATATAAATTGGCACTGAAAAGCGACTCTGTCTCGAAATGTGATCTACAGAATCATTTGACTAACTTCAAATCAGTAGAACTACAGAACTGATCTTAAAACCATCATGCAGTTTCaaaaatatagattatatatgtttatatatattattataaaggtcaaaaaaaaaaaattacaaaagatGCGTAATCTCCCTTATAAAGATACAGTAGCCCCTATAATGTTTGCTATTCCCGTTTTCACTCTAATTTGTAGCCTGTGCTTGGTGTTGAGAGCTGTGGAATTGTGGGCAGGTTGTGGCTCCCCCTGCTGGCCGCTCATGGCGATTGGGCGTTTACATGCACTCGAACTCATCGATACGCTGTTTGGTGTTTCCGGAACGGATCTGCCGGAGCGTCTTGTATTTGTCACGCCCGGCTCGCACGTTCTCCGCATGGATGATGTCGTTCTGCGTTTTCTTCGTCTCGTCACGAGCGTTAGCCAGCTCCGTGCTCAGAGCCTAACGGAGAAACAAAAGgataaagagatagagagatagagagagagaaagaaagagtgtgtgtgagtaaattcAAAGATTGTCTTGCCATGGACCAGAATCTTGCTCAGGAAGTCTGCCTTCTGTTATGATCATGATGATACATTATAGGAATTGAAGCTACC
>TU461271
tgtttttttaatactttattgaCAGTTTAAATGAAGACATTCAAAGCAAATATCCTTGTTCTCGATTGGCTAAACAGAAGGCACATGGCACCTGCGGAGCGGCAAACAGAAGATAAACTAATCCAAGATCTCTATCTCTTACATATCAATAACAGTCATGATTATCCGTAAGCTAAAGAATAAACCCGAGATAAAATAACCATATTGCTTCAGTGCAGCAGTTCGCTGCGTTTAACAACAGAACGACGGAAATGTATTAGAGAGGTGTCGTGTATAAATAGCACACACTCGCTAAATGAGGCTAAAATCTacaacaaggaaaaaaacacagctctgCTCTTGCGTGTTTTTCTAATACAGATTTCTTCAAAATAATACTGCAAAGTTtccatatcttaaaaaaaaaacaaaaaacaaaacaaaagcttaGCATTagaataagataaaataaaaactacggtcgaaaaaaattacagttcgATATTTTACTTCGATTGCATTGGCGAATGCAGGGAGCGTCCACAGACCTGCGCTGGTGTCGCGGAGGGGCATCAACGGGgaccacacacactcgcacacacacactcgcacaaacacacacacacacacacacacacacacacacacacaga

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU461266 True 1687 TUCP 0.38 2 18263480 18277958
TU461271 False 632 lncRNA 0.39 2 17874915 18277958

Neighbor

gene id symbol gene type direction distance location
iqcd NA coding downstream 92263 17778461 ~ 17782652 (-)
LOC117596209 LOC108262359,LOC108262004,LOC108260034,LOC108260038 coding downstream 125725 17744167 ~ 17749190 (-)
LOC113544925 NA coding downstream 180441 17691263 ~ 17694474 (-)
uprt uprt,LOC107733222 coding downstream 240854 17627530 ~ 17634061 (-)
LOC117595671 LOC108262359,LOC108260034,LOC108262004,LOC108260038 coding downstream 348579 17520856 ~ 17526336 (-)
stard8 stard8 coding upstream 39791 18317749 ~ 18351286 (-)
yipf6 yipf6,LOC106603310,LOC106567783,LOC107746343,LOC107596694 coding upstream 76832 18354790 ~ 18358497 (-)
ar ar coding upstream 140591 18418549 ~ 18526492 (-)
arhgap20b LOC108260054 coding upstream 301363 18579321 ~ 18604436 (-)
LOC117596266 NA coding upstream 460451 18738409 ~ 18739851 (-)
G389067 NA non-coding downstream 59754 17804784 ~ 17815161 (-)
G389065 NA non-coding downstream 73762 17798882 ~ 17801153 (-)
G389064 NA non-coding downstream 77094 17797397 ~ 17797821 (-)
G389062 NA non-coding downstream 84609 17790027 ~ 17790306 (-)
G388875 NA non-coding downstream 115330 17759160 ~ 17759585 (-)
G389163 NA non-coding upstream 36456 18314414 ~ 18353783 (-)
G389185 NA non-coding upstream 66155 18344113 ~ 18345716 (-)
G389191 NA non-coding upstream 89500 18367458 ~ 18369497 (-)
G389094 NA non-coding upstream 128130 18406088 ~ 18409912 (-)
G389203 NA non-coding upstream 134582 18412540 ~ 18413439 (-)
LOC117596207 LOC108262004,LOC108262359,LOC108260034,LOC108260038 other downstream 147090 17668368 ~ 17727825 (-)
LOC113524239 NA other downstream 330332 17535427 ~ 17544583 (-)
G388705 nono,LOC103047741,LOC107672625,LOC107741185,LOC107756548 other downstream 546895 17290344 ~ 17328020 (-)
crx crx other downstream 904889 16965966 ~ 16970026 (-)
fxyd2 NA other downstream 1111439 16758240 ~ 16763476 (-)
fdx1b LOC108259761 other upstream 262372 18540330 ~ 18630565 (-)
efnb1 efnb1 other upstream 416978 18694936 ~ 18831812 (-)

Expression


Co-expression Network