G389203


Basic Information

Item Value
gene id G389203
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047621.1
NCBI id CM018567.1
chromosome length 18889892
location 18412540 ~ 18413439 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU461405
ggaaattAACTCCAAATAAAATTAGCCAAATGGCTTAAGGTTTTTGAGTtcttgttaatatttttattacaatttagagatttgttttaaaattacaaactgctccttcaGGATGAAGCTAGTTCTCAAATTTAAGCTAACACACTCATCGCATTTTAGCTAAACAGCATAAACACACTGTAATCGCGACTTTTTAGCATCTTTGTGTCTTTTATGAAGTGCTTATATAGTGCTTTGGAAGTGCTTACGTAGCTATTGAAGTGCTTATGTAACGTCTAAGAAGTGCTTATGTAGTGCCTATGTAGTGATCACACAGTGCTTATGTAGTGCCTATGGAGTGCTTATGTAGTGAAAACGCTCTGCTTTTGTACTTTTGCTACTCGAATCAATGCCTTAAGATGAAGTTCGTTCTTTCCGTTAGTCGGCTTTAAGCTAGCGCGCTGTTAGCGAGTCGTCTGAGCACCAaaggtttgttttgattttcatCTTGTAGCATGCACGCTTCACTTAACGCAAGCCAAAGTTAAAATCAGTCaagaaataaagcaataaattaaaaaaaaatgcaaaaaaatacaaaaaactttttgaatGTAGATTAGGACACGTTTCAAACCTTTCCGCTTGATTATTCAATCGATTAAGAGGCTCCTGTAACATACACTGATAAACAATTCACATTAACCGACGTTTCCATCAATAATTCGGGGAaaaagagtctttttttttattcttttaatagTTTTTGGTGAACTGCTGTCCTGTATGTGAcacaaaaatttgaaaaatttccTCAGTTAAtcagtcaattttttttaatactattgTGTGAATTGTGGTTTTAAAGGTTTCAAAGAAATCGatgtaaaaaaggaaaaaatataaaaaattaagcgccat

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU461405 True 900 lncRNA 0.33 1 18412540 18413439

Neighbor

gene id symbol gene type direction distance location
yipf6 yipf6,LOC106603310,LOC106567783,LOC107746343,LOC107596694 coding downstream 54043 18354790 ~ 18358497 (-)
stard8 stard8 coding downstream 61254 18317749 ~ 18351286 (-)
zc4h2 zc4h2,LOC107663226,LOC107557113 coding downstream 218052 18188605 ~ 18194488 (-)
mtmr8 mtmr8,LOC108444279 coding downstream 235343 18166620 ~ 18177197 (-)
amer1 amer1 coding downstream 248524 18158826 ~ 18164016 (-)
ar ar coding upstream 5110 18418549 ~ 18526492 (-)
arhgap20b LOC108260054 coding upstream 165882 18579321 ~ 18604436 (-)
LOC117596266 NA coding upstream 324970 18738409 ~ 18739851 (-)
LOC113524218 NA coding upstream 331071 18744510 ~ 18749555 (-)
trnap-agg_16 NA coding upstream 471443 18884882 ~ 18884953 (-)
G389094 NA non-coding downstream 2628 18406088 ~ 18409912 (-)
G389095 NA non-coding downstream 20265 18258897 ~ 18392275 (-)
G389191 NA non-coding downstream 43043 18367458 ~ 18369497 (-)
G389163 NA non-coding downstream 58757 18314414 ~ 18353783 (-)
G389185 NA non-coding downstream 66824 18344113 ~ 18345716 (-)
G389204 NA non-coding upstream 3389 18416828 ~ 18418244 (-)
G389378 NA non-coding upstream 90001 18503440 ~ 18503702 (-)
G389397 NA non-coding upstream 199639 18613078 ~ 18613561 (-)
G389406 NA non-coding upstream 264496 18677935 ~ 18681144 (-)
G389410 NA non-coding upstream 283430 18696869 ~ 18769325 (-)
G389092 NA other downstream 134582 17874915 ~ 18277958 (-)
las1l las1l other downstream 181570 18216217 ~ 18230970 (-)
smarca1 LOC108260009,LOC103034185,LOC105028962,LOC106603320,LOC106567799 other downstream 317767 18073712 ~ 18094773 (-)
LOC117596207 LOC108262004,LOC108262359,LOC108260034,LOC108260038 other downstream 684715 17668368 ~ 17727825 (-)
LOC113524239 NA other downstream 867957 17535427 ~ 17544583 (-)
fdx1b LOC108259761 other upstream 126891 18540330 ~ 18630565 (-)
efnb1 efnb1 other upstream 281497 18694936 ~ 18831812 (-)

Expression


Co-expression Network