RNA id: XM_034300518.1


Basic Information

Item Value
RNA id XM_034300518.1
length 1773
RNA type mRNA
GC content 0.43
exon number 7
gene id LOC113531111
representative True

Chromosome Information

Item Value
chromosome id NC_047621.1
NCBI id CM018567.1
chromosome length 18889892
location 17506787 ~ 17515118 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TCTCTGTCACTGTTAAGTGGAGGACTTACAGGATTATTGAGAACATCACAATGCACTTAGGACAGaagtcatttctgttttttactATTTGCATCGCTTCATTTCTTGGGTTTAATTACTTCAGCTACAACTCCTCTTGGTTCAGtGGTGTGTTGGAGTGCAGACCGATTGTgggaaaaaaacagcatgttagTATGGACTTAATCTTTCCTGCAGGGACGTCATGCAAGCAGCCCAGTGTAAGTAATAGtcggGCAGATGTTGCCACGACGACCCAGTGGTTAGCTCCGATTGTATGGGAGGAAACGTTTGATCTGACAGTGATTGATGGCATCTACAAACAACAGAACATCACTGTGGCAACCACCGTCTTCGCTCTGGGGAAGTACGTCATGACACCTTTCAAGTATTGTGGGTATGTGCGTTTCCTGAAGGACTTCCTAGAGTCGGCGGAGCAGCACTTCATGGTGGGCTACCGAGTGCATTATTACCTGTTTACAGATCACCCGGACAAAGTTCCCGTGGTAACACTGGGGGAGGGGCGTCAGTTGACCGTGATAAAAACAGCAAGCTCAAACCGCTGGCAGGAAAACTCGCTACGCAGGATGGGGATGATTGAGAAGCTCATTGAAGAGAAGCTCAGGAACAAGGCAGACTACATATTCAGCCTCGACGTCGACTCCAAATTCTATGCTCACTGGGGGGCGGAGTCTCTGGGCGATCTTGTTGGCGTGCTGCATGCCTGGCTTTTTGGAACATCTCGGGAACAGTTCACGTACGAGAGGCGTCCTGAATCTCAGGCCTTCATACCTTTAGAAGAAGGAGACTACTACTACGGAGGGGCCGTGATCGGAGGGCGCCTCGACAAAGTGCTCAAGCTGGCGAAGACGTGCCGCATGCAGCTGGAAGCGGACCGAGCAAATCAAATCGAAGCGGTATGGCAGGAAGAGTCTCACCTGAACAAGTACTTCCTGTACAACAAACCCACCAAGTTGCTCTCACCTGAATACCTGTGGGATGACAGAAAAGAGAAACCCACCTTCATGAAAGTGGTGCGTTTCTCACAGGTGGTCAAAAACTATGCTGAGATTCGACCCAACCCTTAATACACACTGTACCTCAGCAGGAATTTATAGGTTTTCACCAAATGAGATTTGTTTTTCTTGATGCGAATCACCTGAATTATCATCCCATTGATCCCAAATCCTAATCCCCTCTGATGGGTTTAacagaatataaacaaactaagcTCTCTCGTTTAATTACTATTATCTCTCAGGTTTCATGCAGAGAACCCCTGACTCCTCCACCACATCCTTCATGGCTAGTTCCTTCacaacatttacagttaaatggAAACCTTTCTGTTAGCCTTCCTACAACATTTCTGGAACATTTTTCATTCTAAGCATTTGATTGTAAACATTCTCAGAACATCCAGAAacatttgtgaatgtttttggAATCAAAAGTTCctaaaaacatttagaaaaggTTTAGAAAAGGTAAAATTGTAAGCTGAACTAATATAAGATGATACTTATgctatttaagcaatatcgcacgagcaagagtgcagttatactgaagaTATCCACGCTcttgcgatattgcttttacaacagttctataaacaagaaattaatactgAGTTACTAGGTTGGTAACAAATCataatatatattgtgtattaatACTAATATAAAATGTGATGATATTTTGCTTGTTGATGAAGCTTTGTTacaataaagcaataaagaaaTTCTAATTCTG

Function

GO:

id name namespace
GO:0016740 transferase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU460855 lncRNA downstream 94879 17410003 ~ 17411908 (-) True G388754
TU460790 lncRNA downstream 151428 17343079 ~ 17355359 (-) True G388709
TU460769 lncRNA downstream 222186 17282100 ~ 17284601 (-) True G388698
TU460762 lncRNA downstream 303795 17202786 ~ 17202992 (-) True G388692
TU460438 lncRNA downstream 517772 16978449 ~ 16989015 (-) True G388440
TU460889 lncRNA upstream 37077 17552195 ~ 17552678 (-) True G388785
TU460885 lncRNA upstream 54497 17569615 ~ 17590207 (-) True G388781
TU460919 lncRNA upstream 86824 17601942 ~ 17620793 (-) True G388814
TU460858 lncRNA upstream 89408 17604526 ~ 17609434 (-) True G388757
TU460929 lncRNA upstream 105818 17620936 ~ 17641169 (-) True G388824
XM_026921904.2 mRNA downstream 23824 17467743 ~ 17482963 (-) False LOC113531290
XM_026921903.2 mRNA downstream 23824 17467743 ~ 17482963 (-) True LOC113531290
XM_026921905.2 mRNA downstream 53377 17449753 ~ 17453410 (-) True si:dkey-237j10.2
XM_034300803.1 mRNA downstream 60481 17412935 ~ 17446306 (-) True si:ch211-26b3.4
XM_026922201.2 mRNA downstream 98575 17402784 ~ 17408212 (-) True apool
XM_034300517.1 mRNA upstream 5738 17520856 ~ 17526336 (-) False LOC117595671
XM_034300516.1 mRNA upstream 5738 17520856 ~ 17526052 (-) True LOC117595671
XM_034300507.1 mRNA upstream 20309 17535427 ~ 17544583 (-) False LOC113524239
XM_034300508.1 mRNA upstream 20309 17535427 ~ 17544583 (-) True LOC113524239
XM_034300867.1 mRNA upstream 112412 17627530 ~ 17634061 (-) True uprt
TU460777 other downstream 178767 17290344 ~ 17328020 (-) True G388705
LOC117596251 other downstream 448905 17055583 ~ 17057882 (-) True LOC117596251
TU460427 other downstream 536761 16966288 ~ 16970026 (-) False crx
trnam-cau_51 other downstream 1071517 16435198 ~ 16435270 (-) True trnam-cau_51
trnam-cau_50 other downstream 1075323 16431392 ~ 16431464 (-) True trnam-cau_50
XR_004577381.1 other upstream 22317 17537435 ~ 17544583 (-) False LOC113524239
TU460953 other upstream 153250 17668368 ~ 17727818 (-) False LOC117596207
TU461266 other upstream 748362 18263480 ~ 18277958 (-) True G389092
TU461629 other upstream 1025212 18540330 ~ 18630565 (-) False fdx1b
trnap-agg_16 other upstream 1369764 18884882 ~ 18884953 (-) True trnap-agg_16

Expression Profile