RNA id: XM_034300517.1


Basic Information

Item Value
RNA id XM_034300517.1
length 1512
RNA type mRNA
GC content 0.45
exon number 6
gene id LOC117595671
representative False

Chromosome Information

Item Value
chromosome id NC_047621.1
NCBI id CM018567.1
chromosome length 18889892
location 17520856 ~ 17526336 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

atcaccccaaaccatgtggcaaaatgtggctgcttttcttcagccagaactggggcttttatcaaagTGTTGGGAATCATGAATAATTTGTTTTCTTCATCAGGTTCATTTACTTCAGCTACACATCCACTTGGTTCAGTGATGTGTTGGAGTGCAGAGTGAATTTGGAAACAAAACAGCATGTTAATATGGACTTAATCTTTCCTGCAGgGATTGCATACACTCAGCCCAGTGTGAGCAGTAGTCGGCCAGATGTTGCCACGACGACGCAATGGTTAGCTCCAATTGTGTGGGAGGGTACATTTGATTTGACGGTGATTGACGGCATCTACAAACAACAGAACATCACTGTGGCTATCACCGTCTTCGCTCTGGGGAAGTATGTGCGTTTCCTGAAGGACTTCCTAGACTCGGCGGAGCAGCACTTCATGGTGGGCTACCGAGTGCATTATTACCTGTTTACAGATCGCCCGGACGAAGTTCCCGTGGTAACACTGGGGGAGGGGCGTCAGTTGACCGTGATAAAAACAGCAAGCTCAAACCGCTGGCAGGAAAACTCGCTACGCAGGATGGAGTTGATTGAGAAGCTCATTGAAGAGAAGCTCAGGAACAAGGCAGACTACATATTCAGCCTCGACGTCGACTCCAAATTCTATGCTCACTGGGGGGCGGAGTCTCTGGGCGATCTTGTTGGTGCGCTGCATGCCTGGTTTTTTGGAACATCTCGGGAACAGTTCACGTACGAGAGGCGTCCTGAATCTCAGGCCTTCATACCTATAGAAGAAGGAGACTACTACTACGGAGGGGCCGTGATCGGAGGACGCCTCGACAAAGTGTTCAAGCTGGCGAAGACGTGCCGCATGCAGCTGGAAGTGGACCGAGCAAATCAAATCGAAGCGGTATGGCAGGAAGAGTCTCACCTGAACAAGTACTTCCTGTACAACAAACCCACCAAGGTGCTCTCACCCGAATACCTGTGGGATGACAAAAAAGAGAAACCCAGCTTCATGAAAGTGGTGCGTTTCTCACAGGTGGTCAAAAACTATGCTGAGATTCGACCCAACCCTTAATGCACACTGTACCTCAGTTCATGTTATGTGTTTTTCACATACCTTTACCTCCATTTTAAATGCAATGGGTTTCTCAGAAAACATAAATGAGCTAAGATCTCTAtcaccaccatctctcaggtTTCAACCATAGACCACACCAGGCTCCTCTACCAACTCAAGATCTTTGTCACCAAGCAGTCTCCCACCTCCCGGCCATGTCACAGAATTTACAGTTAGACACAAATTAGCATTATAGAAATGTTAACATTCCTAAAACAGAACATTAGTTGAAGAAAACATCTATGAACACTCATGGAACCAAAATTTCCTAAAACAATAACAATCAGGGAATgtttgcttttgtgtgttttcctggGTTTTTGggtcatgattttatttttgtaagtgAAACTTTATTACACAAAACAGGTTACtcaataaagaaaattattaaagGAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU460855 lncRNA downstream 108948 17410003 ~ 17411908 (-) True G388754
TU460790 lncRNA downstream 165497 17343079 ~ 17355359 (-) True G388709
TU460769 lncRNA downstream 236255 17282100 ~ 17284601 (-) True G388698
TU460762 lncRNA downstream 317864 17202786 ~ 17202992 (-) True G388692
TU460438 lncRNA downstream 531841 16978449 ~ 16989015 (-) True G388440
TU460889 lncRNA upstream 25859 17552195 ~ 17552678 (-) True G388785
TU460885 lncRNA upstream 43279 17569615 ~ 17590207 (-) True G388781
TU460919 lncRNA upstream 75606 17601942 ~ 17620793 (-) True G388814
TU460858 lncRNA upstream 78190 17604526 ~ 17609434 (-) True G388757
TU460929 lncRNA upstream 94600 17620936 ~ 17641169 (-) True G388824
XM_034300519.1 mRNA downstream 5738 17506787 ~ 17515118 (-) False LOC113531111
XM_026921612.2 mRNA downstream 5738 17506787 ~ 17515118 (-) False LOC113531111
XM_034300518.1 mRNA downstream 5738 17506787 ~ 17515118 (-) True LOC113531111
XM_034300520.1 mRNA downstream 5832 17506787 ~ 17515024 (-) False LOC113531111
XM_026921904.2 mRNA downstream 37893 17467743 ~ 17482963 (-) False LOC113531290
XM_034300507.1 mRNA upstream 9091 17535427 ~ 17544583 (-) False LOC113524239
XM_034300508.1 mRNA upstream 9091 17535427 ~ 17544583 (-) True LOC113524239
XM_034300867.1 mRNA upstream 101194 17627530 ~ 17634061 (-) True uprt
XM_034300482.1 mRNA upstream 164927 17691263 ~ 17694474 (-) True LOC113544925
XM_034300481.1 mRNA upstream 171879 17698215 ~ 17727812 (-) False LOC117596207
TU460777 other downstream 192836 17290344 ~ 17328020 (-) True G388705
LOC117596251 other downstream 462974 17055583 ~ 17057882 (-) True LOC117596251
TU460427 other downstream 550830 16966288 ~ 16970026 (-) False crx
trnam-cau_51 other downstream 1085586 16435198 ~ 16435270 (-) True trnam-cau_51
trnam-cau_50 other downstream 1089392 16431392 ~ 16431464 (-) True trnam-cau_50
XR_004577381.1 other upstream 11099 17537435 ~ 17544583 (-) False LOC113524239
TU460953 other upstream 142032 17668368 ~ 17727818 (-) False LOC117596207
TU461266 other upstream 737144 18263480 ~ 18277958 (-) True G389092
TU461629 other upstream 1013994 18540330 ~ 18630565 (-) False fdx1b
trnap-agg_16 other upstream 1358546 18884882 ~ 18884953 (-) True trnap-agg_16

Expression Profile