G388824


Basic Information

Item Value
gene id G388824
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047621.1
NCBI id CM018567.1
chromosome length 18889892
location 17620936 ~ 17641169 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU460929
CCAGCCTTAACACCTAGCCGAGAGAGCCAGACAGTGGGATTATGGGATAGCGCAAGAGAGTCAGtgaggagagagtgagatgtTCTCTACCTTTGTGTAAATGTCGCTGCATCTGCCCACCTACTGCATTTCTCACAATTAAGATGAGCCGCACTGTGACAGCAGCACGCACCGCAACACAgcactacactgtgtgtgtgtgtgtgtgtgagagagagaaagagga

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU460929 True 226 lncRNA 0.51 2 17620936 17641169

Neighbor

gene id symbol gene type direction distance location
LOC117595671 LOC108262359,LOC108260034,LOC108262004,LOC108260038 coding downstream 94600 17520856 ~ 17526336 (-)
LOC113531111 LOC108262359,LOC108262004,LOC108260034,LOC108260038 coding downstream 105818 17506787 ~ 17515118 (-)
LOC113531290 LOC108260034,LOC108262004,LOC108260038 coding downstream 137973 17467743 ~ 17482963 (-)
si:dkey-237j10.2 LOC108260035 coding downstream 167526 17449753 ~ 17453410 (-)
si:ch211-26b3.4 si:ch211-26b3.4,LOC108260033,LOC108442048,LOC107597246,LOC107756552,LOC107565423,LOC107741180 coding downstream 174630 17412935 ~ 17446306 (-)
LOC113544925 NA coding upstream 50094 17691263 ~ 17694474 (-)
LOC117596209 LOC108262359,LOC108262004,LOC108260034,LOC108260038 coding upstream 102998 17744167 ~ 17749190 (-)
iqcd NA coding upstream 137292 17778461 ~ 17782652 (-)
tenm1 NA coding upstream 208178 17849347 ~ 17993048 (-)
arhgef9a arhgef9,arhgef9a,LOC107741200,LOC107557118,LOC107597261 coding upstream 479851 18121020 ~ 18152194 (-)
G388814 NA non-coding downstream 143 17601942 ~ 17620793 (-)
G388757 NA non-coding downstream 11502 17604526 ~ 17609434 (-)
G388781 LOC108443758 non-coding downstream 30729 17569615 ~ 17590207 (-)
G388785 NA non-coding downstream 68258 17552195 ~ 17552678 (-)
G388754 NA non-coding downstream 209028 17410003 ~ 17411908 (-)
G388865 NA non-coding upstream 65672 17706841 ~ 17726439 (-)
G388874 NA non-coding upstream 114417 17755586 ~ 17757330 (-)
G388875 NA non-coding upstream 117991 17759160 ~ 17759585 (-)
G389062 NA non-coding upstream 148858 17790027 ~ 17790306 (-)
G389064 NA non-coding upstream 156228 17797397 ~ 17797821 (-)
LOC113524239 NA other downstream 76353 17535427 ~ 17544583 (-)
G388705 nono,LOC103047741,LOC107672625,LOC107741185,LOC107756548 other downstream 292916 17290344 ~ 17328020 (-)
crx crx other downstream 650910 16965966 ~ 16970026 (-)
fxyd2 NA other downstream 857460 16758240 ~ 16763476 (-)
LOC113531235 NA other downstream 1240149 16363494 ~ 16380787 (-)
LOC117596207 LOC108262004,LOC108262359,LOC108260034,LOC108260038 other upstream 27199 17668368 ~ 17727825 (-)
G389092 NA other upstream 233746 17874915 ~ 18277958 (-)
smarca1 LOC108260009,LOC103034185,LOC105028962,LOC106603320,LOC106567799 other upstream 432543 18073712 ~ 18094773 (-)
las1l las1l other upstream 575048 18216217 ~ 18230970 (-)
fdx1b LOC108259761 other upstream 899161 18540330 ~ 18630565 (-)

Expression


Co-expression Network