RNA id: LOC117596251


Basic Information

Item Value
RNA id LOC117596251
length 2208
RNA type V_segment
GC content 0.41
exon number 2
gene id LOC117596251
representative True

Chromosome Information

Item Value
chromosome id NC_047621.1
NCBI id CM018567.1
chromosome length 18889892
location 17055583 ~ 17057882 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GTGGagtctctctttcacttctcTCTGAGTGGAAGAACGACAAACTCTGTATATTGATGCATTAAAAAATTCCATCTAGAATGTATTTGAGTTAAACTCAGTAAAGCAGTAGGATTCCACAGATGATATAAATACTGAAATAGATACAACATGATAACTTTGACTCTAAACAACTCAGTGTAAAGATGTACAGATGTAAAGATGTGTACTCTAAAGCACATGACGGTAATGTAGTAGCTcagctgtggtgtgtgttgttgagCGTCTCCTCCCTCTGCccctcctcctgtctctcttatAGCACGTCCCTGCAGTCTCTCCTTTATCTGCTCCTCACGCTGCTCATCTCTTCACTCAGCACGAGAGTCTCCTCACACACGGACACGATGCTGCCAGCGCTCTGCTCTCTCTTCACTGCTCTCTCATGTGTCAGTAGTGTGATTGCAGTGACGCAGAAGCCTCCTGTTCTCACACTGACTCAAGGACAGACGGCCACCATGGACTGTAATCTGAGGACTGTTGTTAACGCTGCACGCTGGTACAAACAGGTTCCAGGAGGAGTTCCTCAGTATATGTTAAGTAATTTTCATGAGTGGGATGCTCCTAAATATGGATCTGATTTCTCGTCTCCTAAATTCACATCAACACACTCCTCTAAATCAGATTACAAACTGATTATCAGTAATGTAGAGGTGGGAGACTCAGCAGTGTATTACTGTCACAGATGGGACAACCCTGCTAAAGAGCACGTATCACAGTGATGTACACCATGACAAAAACCTCCTCACTGCTCACACTCACTTCTGCTGTCACACAACACgagaaacaacaaaaacctGAACTTCAAATCATTGGAACTGAAGTGGAAACTCACTTGATGTGCTCTCCACTGAAGAAGTTTCAGCACTGAATCAGAAGGCTTTTTCCACACTATTTGGACAAACGGATGTAGTGGATTTATAAGATGTAGCAGTAAGATTTGGAACTGGACTCGTCAGAACGATTCGATCATGAAAGTGGATCAGAGAGACCATGTACATTATATttggtcattttatttaaaaagaaatgtatattCCTTACCAGAGCATATCTGGtatcattttattccttatttcatggtgaaaaatacacacacatatgtgcagATCAGAGCCATCTGGTCTGTTCAATTCTGAGCTTCTTGATCATCCTTATCACACCTTCTTGACCTCCTCTCCCAGACAGAGGGTCTTGTGTTTACAGCCCAATTAGGACCCTGGGATGACTTGTCCAGGTTGTGGCCTCATTCTACCATAAAAGgacattaaaagaaagaaacaaaataaatcaacagcTCATTTAAATCTACCATTGATTAAGGGTTAATGGAAAAGAGGTGTAAAGTGTTTTTCCCTCCTGTTATCGTTATAAAGCTATACTTTAATTTTACTTGGCCACATTAATGGATATGTTCAGCAGACAGTCCTGCATGCTGTTCACTGCTCAGTGGACTGATGAAGAGGTGTGATGTGACAGCACATGGTGAAATTAATGTGCATGTCAGCAGTAAATGATTTGATATTTCTCTGATAGACAAGCAATGTAGCATCATTATCATACTTCATTACTCCACTGCAACCTAAATCACTAAACATCTTCGTCTAAACACTATGCAGTACATCATCAGTGAAACTCTACTCAGATGATGAGGATTGTGTCATGATATGTGTCAGGTTCTGGCCAGATTTGGGAATgttatttaatatcaatttcCTGATTTCATATTAAACCCTTGAGCGTATCATGATTTCATATTAAACCCTTGAGCGTATCTGGTGAGACATTTCTGTAATGAGCGCAGCACATGGGAAAGTGTGTAACAGTGCGTTTATCAGAACATGACCCAGAGTCAGAGACACTGAAGTGGACATCCAGAacaacatccatccatctcccAGTCCAGATAATACACAGAACTGTATGGTCCTGTCAGTGTCTATAGTTTAACTCACACTGACTCATCGTACATCACGGATGGAGAAACACACTCAGGATACACCTGCTGGTCCTCACACTGACATTTTAGCTCTATGTAAATGATGAGCTTCTTCTCTGAAATGTAGAGGGACACGTTCTACATGTAACTGATTTATTTCATCTACAGAAATTGTGTCATTGTAACAATTACTCTGAGATCAGCTCATTAAAAAAGAGTCTTTTTAAGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU460436 lncRNA downstream 66568 16978449 ~ 16989015 (-) False G388440
TU460437 lncRNA downstream 66568 16978449 ~ 16989015 (-) False G388440
TU460438 lncRNA downstream 66568 16978449 ~ 16989015 (-) True G388440
TU460396 lncRNA downstream 104532 16945913 ~ 16951051 (-) True G388406
TU460395 lncRNA downstream 105047 16948975 ~ 16950536 (-) True G388405
TU460762 lncRNA upstream 144904 17202786 ~ 17202992 (-) True G388692
TU460769 lncRNA upstream 224218 17282100 ~ 17284601 (-) True G388698
TU460790 lncRNA upstream 285197 17343079 ~ 17355359 (-) True G388709
TU460855 lncRNA upstream 352121 17410003 ~ 17411908 (-) True G388754
TU460889 lncRNA upstream 494313 17552195 ~ 17552678 (-) True G388785
XM_034300755.1 mRNA downstream 2946 17046590 ~ 17052637 (-) True LOC117596250
XM_034300757.1 mRNA downstream 2966 17046590 ~ 17052617 (-) False LOC117596250
XM_034300756.1 mRNA downstream 3395 17046590 ~ 17052188 (-) False LOC117596250
XM_026921792.2 mRNA downstream 16031 17035458 ~ 17039552 (-) True nccrp1
XM_034300430.1 mRNA downstream 21765 17008524 ~ 17033818 (-) True slc8a2a
XM_026921726.2 mRNA upstream 12534 17070416 ~ 17097720 (-) False mark4a
XM_026921729.2 mRNA upstream 12534 17070416 ~ 17097720 (-) True mark4a
XM_026921728.2 mRNA upstream 12534 17070416 ~ 17091961 (-) False mark4a
XM_026921727.2 mRNA upstream 17070 17074952 ~ 17097720 (-) False mark4a
XM_026921718.2 mRNA upstream 55225 17113107 ~ 17131362 (-) False exoc3l2a
TU460427 other downstream 85557 16966288 ~ 16970026 (-) False crx
trnam-cau_51 other downstream 620313 16435198 ~ 16435270 (-) True trnam-cau_51
trnam-cau_50 other downstream 624119 16431392 ~ 16431464 (-) True trnam-cau_50
XR_003403223.2 other downstream 674796 16377585 ~ 16380787 (-) False LOC113531235
TU459046 other downstream 2132199 14916662 ~ 14923384 (-) True ccdc84
TU460777 other upstream 232462 17290344 ~ 17328020 (-) True G388705
XR_004577381.1 other upstream 479553 17537435 ~ 17544583 (-) False LOC113524239
TU460953 other upstream 610486 17668368 ~ 17727818 (-) False LOC117596207
TU461266 other upstream 1205598 18263480 ~ 18277958 (-) True G389092
TU461629 other upstream 1482448 18540330 ~ 18630565 (-) False fdx1b

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01098551_00000076_00000589.mRNA True 1093 mRNA 0.37 2 CI01098551 76 ~ 1309 (+)
mexican tetra (Astyanax mexicanus) LOC111197113 True 864 V_segment 0.44 4 NW_019171158.1 41646 ~ 45519 (+)