RNA id: XM_026921792.2


Basic Information

Item Value
RNA id XM_026921792.2
length 961
RNA type mRNA
GC content 0.51
exon number 6
gene id nccrp1
representative True

Chromosome Information

Item Value
chromosome id NC_047621.1
NCBI id CM018567.1
chromosome length 18889892
location 17035458 ~ 17039552 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CAGCGCCTGATAAATGGACTCGGCTTCTTCCTGCTTTGGAGAAACGAGAAGCTTCTGGAGGAAAGAAAACGTCTCCAATGGCGGACTGGAAGCAGAAATGCGATTCAGAGTGGCAGCTGGCTGCTAACGGAGTTCCTTTACCGGACAACGTGGACTGGAAAAGCGTGTACGAGAAGAAACCGCTGGAACGGAATTTACTGAAGAACCCGTCGCCTCACGGTTTGACTCATGACAAGCCGCCGCCCGAACGTGAGGTCACAGGAGAACGTCCGGACCCTGACCAGCTACCGCAGTTCGGACCAACTGgTGATTTCTCAGGTTGGAGCACCAGTACAGAGAGGTTGCCGGTGGACACCAGCGGTATTCCTCCGGGTGTCGTGGTCTGCTATATGCCAGACTTCAGCTGGTTCTCCTTGGAGCAGCAAGTCGATCTGAAGGCTGAAGGACTGTGGGATGAACTACTTGACAAATTCCAGCCGGACATAGCCATCGAGGACTGgtatgagGAGAGTCAACTCCATGCCTCTATCTATGAGCTTCATGTGAAACTCCTAGCTGCTGATGGACAGACAGTGATTAAGGAACACACATGCAGTCCCACAGAGGACCTGGAGATCTACTCTCACAACTGGAaacaggTGTCCCACGTGTTCTCGGGCTACGGGCCTGGCGTGAGATACGTTCACTTCCGGCACAAAGTGAAAACCAAGTTCATGGTGGAATTCTTCGGCACCATGGTCACCGGTAGCTCCGTTGTCGTCAAGGCAACCAAATCCAGCCCATAATACTATACAGCAGCTGGAGGTCTACTGTATGCTTTTGTCTGTAGGAAAGTGATGATGCAGCAGTGAGAAATGGCGCGAATGCAACAGACCTGCCTCTTCTGTAACACTGAGGTTCAGCtcatcttttaaaaatggattgCACACTTCAATAAACCAAAGCGTTTCTCAACACCAAA

Function

GO:

id name namespace
GO:0030163 protein catabolic process biological_process
GO:0005737 cytoplasm cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU460436 lncRNA downstream 46443 16978449 ~ 16989015 (-) False G388440
TU460437 lncRNA downstream 46443 16978449 ~ 16989015 (-) False G388440
TU460438 lncRNA downstream 46443 16978449 ~ 16989015 (-) True G388440
TU460396 lncRNA downstream 84407 16945913 ~ 16951051 (-) True G388406
TU460762 lncRNA upstream 163234 17202786 ~ 17202992 (-) True G388692
TU460769 lncRNA upstream 242548 17282100 ~ 17284601 (-) True G388698
TU460790 lncRNA upstream 303527 17343079 ~ 17355359 (-) True G388709
TU460855 lncRNA upstream 370451 17410003 ~ 17411908 (-) True G388754
TU460889 lncRNA upstream 512643 17552195 ~ 17552678 (-) True G388785
XM_034300430.1 mRNA downstream 1640 17008524 ~ 17033818 (-) True slc8a2a
XM_026921786.2 mRNA downstream 28126 16999734 ~ 17007332 (-) True srsf7a
XM_034300808.1 mRNA downstream 65444 16965966 ~ 16970014 (-) True crx
XM_026921817.2 mRNA downstream 80285 16951381 ~ 16955173 (-) True LOC113531238
XM_026921782.2 mRNA downstream 108279 16908561 ~ 16927179 (-) True gjd1a
XM_034300755.1 mRNA upstream 7038 17046590 ~ 17052637 (-) True LOC117596250
XM_034300757.1 mRNA upstream 7038 17046590 ~ 17052617 (-) False LOC117596250
XM_034300756.1 mRNA upstream 7038 17046590 ~ 17052188 (-) False LOC117596250
XM_026921726.2 mRNA upstream 30864 17070416 ~ 17097720 (-) False mark4a
XM_026921729.2 mRNA upstream 30864 17070416 ~ 17097720 (-) True mark4a
TU460427 other downstream 65432 16966288 ~ 16970026 (-) False crx
trnam-cau_51 other downstream 600188 16435198 ~ 16435270 (-) True trnam-cau_51
trnam-cau_50 other downstream 603994 16431392 ~ 16431464 (-) True trnam-cau_50
XR_003403223.2 other downstream 654671 16377585 ~ 16380787 (-) False LOC113531235
TU459046 other downstream 2112074 14916662 ~ 14923384 (-) True ccdc84
LOC117596251 other upstream 16031 17055583 ~ 17057882 (-) True LOC117596251
TU460777 other upstream 250792 17290344 ~ 17328020 (-) True G388705
XR_004577381.1 other upstream 497883 17537435 ~ 17544583 (-) False LOC113524239
TU460953 other upstream 628816 17668368 ~ 17727818 (-) False LOC117596207
TU461266 other upstream 1223928 18263480 ~ 18277958 (-) True G389092

Expression Profile