RNA id: TU460855


Basic Information

Item Value
RNA id TU460855
length 1906
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G388754
representative True

Chromosome Information

Item Value
chromosome id NC_047621.1
NCBI id CM018567.1
chromosome length 18889892
location 17410003 ~ 17411908 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GTAGCTAGATGTAACAAGCTAATAGAgtgattagctagctaatgtcacTCTATAAAATGATGTCTTAcgtaaaataaattattaaagaagCCAGGATTACACTGAGATCAAGATAAGTGGATTTTTTGATTTGAGATTTAAACCATTAGTAACAGATCTGGATGGTTTCTAGCTCAAATTTCGGGTCGATCACGTTCTTGCTAGCGATGGGCATTATGATCAATTTAAGCGATTCAAATCTTTCAAACGACTCCTTAAAATGAATCAaagattagttttttttattcatttgattcacGACTCATTCATGGTTTCATATTATTCTACAATATTTGTATAATACGATCAGTTTAATCCACATTTTCTCATGTTTCCGAATCGATTTGCCTTTTTTACTGAGAGTGTCACTCAAAATGAgcgaatctttttttttatgaatcgCCCATCACAAGAATTTATGCAGAATCTATATACAGAACACAAAAGATCAGAAATGTGCACAGGATATGTTTTGATTCTTTGTAACTGCTCAAAGGTTAGCATTAGCGATGGATTTTCAGTTCTGTTTGTTTCAGACTAGCCCTGGCTTCGGCGCTGTGCTGGTGGAAaaatactgtctgtgtgtttcagtactGTCCTTAACACACcctcactgtttttcttttctgatcaGCCACCGTTTTGTGCAGTCCATTCGCTTGTGTGCTAATTAGCAGACTTGCTAACTACATGTACAGTTGTCAGaaatgatatatatttaaagtactTCATTGCTCTGTTTACATTTCTAACCAACTCTAGTTGCTGGGTTTAAAGGGTTTACCTTCTGAAACTGGTAAATCTTTGAGAATGTTATAACTAGTTTCACTTGCATTAAAAGTGAATTTAATCAACGTGGAGTGGCGTGAGGAAGCGAGTCATGGTGTGTTAGGAACAGTACTGAATCAGGGcccgtgtgtgttgtgttaaaaCTGAGCTTTGCTGAAATGAATGTGGATCATTTCTGTTTAATTCTGTATGTTGACTTGATCGGAGGGGGAAATTCTGCGTCTACGCTCGAGTCCACATCAACGTTGTGTGAAATGTATTTACTGATGTGTTTTCCACGCAGCTTTTCTCATAGTGTTCTACTGTATTCACATTCCATCACCGTGTGAATAGAACGGCTGGGGGACGTACCTGAATCGAGTcgaatgtaattatttttaacagtgtaaATTGTACAGACTATTGAAAaacttaacacaaacacacacacacacacacacacactttctgtccTTTACGTTTCCGTGATGTAGAATGTCCTCATATTTTAAACTCCACTGTGGACCGAATTTAAAGCATCTCCAGCATCATATGTACGATTGCATatatatacacgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtccgttcTCCTGGGCTTCACTGTGGTTTAGGGCACTTATTTCCCGCCCTGCTCTCCGCCCTGCTGAGTGAAGTGGAAGTTGCACTGAGACTTCTCCATCAGAAAGCgctgctcttttctttctgcCCTTCTGCACTCCAGAACTCTTCGTGTCACTCCAGTGTCACTGCAGGCTcgccctcctttttttttcctatatacacacatatataaatataaatatatatatatatgataaagattgtaaaatgcaaacatgaataaatgaagatcTCTGCACTTATGAGGCTGTGTTGCGATTTGTGTCGTTTTGACCCCGAGCGGCATCCGTAGTTTGCTCTTGTTTTGACCCTCTTGGCTTCCCATATTCATTTCTTGTTTTCCGGTTCTCACCTGCTGTTATTAGTTCTTCCTGTTCTTCCTTCAGactttcctctgtttttttttttttttacctgctgaTCTTTGTGAGTGAGTCAGTAAAG

Function

GO:

id name namespace
GO:0038023 signaling receptor activity molecular_function
GO:0060089 molecular transducer activity molecular_function
GO:0071855 neuropeptide receptor binding molecular_function
GO:0031841 neuropeptide Y receptor binding molecular_function
GO:0031843 type 2 neuropeptide Y receptor binding molecular_function
GO:0004888 transmembrane signaling receptor activity molecular_function
GO:0004930 G protein-coupled receptor activity molecular_function
GO:0001664 G protein-coupled receptor binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU460790 lncRNA downstream 54644 17343079 ~ 17355359 (-) True G388709
TU460769 lncRNA downstream 125402 17282100 ~ 17284601 (-) True G388698
TU460762 lncRNA downstream 207011 17202786 ~ 17202992 (-) True G388692
TU460436 lncRNA downstream 420988 16978449 ~ 16989015 (-) False G388440
TU460889 lncRNA upstream 140287 17552195 ~ 17552678 (-) True G388785
TU460885 lncRNA upstream 157707 17569615 ~ 17590207 (-) True G388781
TU460919 lncRNA upstream 190034 17601942 ~ 17620793 (-) True G388814
TU460858 lncRNA upstream 192618 17604526 ~ 17609434 (-) True G388757
TU460929 lncRNA upstream 209028 17620936 ~ 17641169 (-) True G388824
XM_026922201.2 mRNA downstream 1791 17402784 ~ 17408212 (-) True apool
XM_034300935.1 mRNA downstream 81948 17323062 ~ 17328055 (-) True nono
XM_034300930.1 mRNA downstream 93761 17300524 ~ 17316242 (-) False aifm1
XM_034300803.1 mRNA upstream 1027 17412935 ~ 17446306 (-) True si:ch211-26b3.4
XM_026921905.2 mRNA upstream 37845 17449753 ~ 17453410 (-) True si:dkey-237j10.2
XM_026921904.2 mRNA upstream 55835 17467743 ~ 17482963 (-) False LOC113531290
XM_026921903.2 mRNA upstream 55835 17467743 ~ 17482963 (-) True LOC113531290
XM_034300519.1 mRNA upstream 94879 17506787 ~ 17515118 (-) False LOC113531111
TU460777 other downstream 81983 17290344 ~ 17328020 (-) True G388705
LOC117596251 other downstream 352121 17055583 ~ 17057882 (-) True LOC117596251
TU460427 other downstream 439977 16966288 ~ 16970026 (-) False crx
trnam-cau_51 other downstream 974733 16435198 ~ 16435270 (-) True trnam-cau_51
trnam-cau_50 other downstream 978539 16431392 ~ 16431464 (-) True trnam-cau_50
XR_004577381.1 other upstream 125527 17537435 ~ 17544583 (-) False LOC113524239
TU460953 other upstream 256460 17668368 ~ 17727818 (-) False LOC117596207
TU461266 other upstream 851572 18263480 ~ 18277958 (-) True G389092
TU461629 other upstream 1128422 18540330 ~ 18630565 (-) False fdx1b
trnap-agg_16 other upstream 1472974 18884882 ~ 18884953 (-) True trnap-agg_16

Expression Profile