RNA id: XM_034300930.1


Basic Information

Item Value
RNA id XM_034300930.1
length 3716
RNA type mRNA
GC content 0.50
exon number 19
gene id aifm1
representative False

Chromosome Information

Item Value
chromosome id NC_047621.1
NCBI id CM018567.1
chromosome length 18889892
location 17300524 ~ 17316242 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GTTTACGGTGATCCCTGACGCTAACACACGACACCGGCCTTGTGAGAACCTGGCGGCGGCGCGCGGGGAGTTTGTGAtctttagtttagtttattgtaaataaactcCAGCTGCAATGTTCCGGTGTAAAGCGGTGTGGAATAAACTGGGCCCGGTGGCGCGAGCCTCCTCCACGCTGTGTCGGCAAACCGGGAAGAGagcgcTGCTGAGGCAGGACAGGAGGCCGGCGTTCGCACCGCAGACCCACATGTCATCGGGTCCGTTGGGAGGAGGCGGAGACAACGCCATATACTACGTGCTGGTGGGAGCGGCATGTGTGGGAGGCGGAGTCTATGCTTACCGCACCCTCTCGGGAGACAGCACCAGGTACTTCGAGAGAATCACAGAAATCGAGGACAGGGCGAAGAAAACGGCAGAACCCGTTCGTCCCACTCCTGCTGTAACGAAAGAACCAGAGGTCACGGCAGAAGCAGGAAagacagaacaaacaaaagAACCCACGGCTGAAGATGTCTCAGAACCCATACATGAGTCTTCAGTTGATGAATCTTCTCAAGAACCAACAGCAACTGAAGTTGACCCAGGAGCCCTTGTGTCTGAGCCAACTGTAACAGAAGCTGCTTCTGAAACTGTTCCAGAAGACCCTACTCCAGAACCTCCTGTAACAGAAGCTGCTTCTGAAACTGTTCCAGAAGACCCTACTCCAGAACCTCCTGTAACAGAACCTGCTTCTGAAACTGTTCCAGAAGACCCTACTCCAGAACCTCCTGTAACAGAACCTGCTTCTGAAACTGTTCCAGAAGACCCTACTCCAGAACCTCCTGTAACAGAAGCTGCTTCTGAAACTGTTCCAGAAGACCCTACTCCAGAACCTTCTGTAACAGAAGCTGCTTCTGAAACTGTTCCAGAAGACCCTACTCCAGAACCTCCTGTAACAGAAGCTTGTACTCCTGAACCTGTCGTGGAGGACCCTGCACCAGAACCTTCTGTAACAGAAGATGTCCCAGAACCCCTTGTTTCTGAATCATCTATAACAGAACCAACTGGAGAAGAAGTGCGCCTTGAAGCTCCTGTAACTGAAGCTCATGTCACTGAAGAAAAATCTGCTGAAGAACCTCCAGCTCCTGTTGTTGAGAGCGAGCCTGTGCCTGAAGTGGCGGCAGAAAGCGTGCCTGAGACTCCACCAGTAGCCCAAAGTGAGCCTGAACCTGCTCCCACTGCCGCCGCCCCTGTAGAACCCACGCCTGCCCTCCCTGAGGTCCCTGCACACACCCCTTACCTCCTGATTGGTGGAGGAACGGCATCGTTTGCAGCAGCGAGGTCTATTCGTGCCCGTGACCCTGGTGCTCGGGTTTTGATCGTGACTGAAGAAACCGACCTGCCGTACATGAGGCCTCCTCTGTCCAAAGAGCTGTGGTTCTCTGACGACCCCGCCGTCACAGAAACACTCCGCTTCAAACAGTGGAACGGCAaagagaggagcatttatttcCAACCTCCTTCTTTCTACGTGAACCCCAGTGAGCTGGAAATGGTGGAAAATGGGGGCGTGGCTGTGCTGATGGGGAAGAAGGTGGTGCACATGGACGTCAGGGAGAATAAAGTTAGACTGAGTGACGGTGCTGAGATCTCTTATGACAAATGTTTGATTGCTACAGgtggAGTTCCCAGAAACCTGCAGGTAATTGAGCGAGCCAGCGAGGAGGTGAAGAACAGGACGACGCTTTTTAGGAAGATTGAGGATTTCAAAGCGCTGGAGAAAGTTTCCCGAGAGCTCAAGTCCATCACCATCATCGGGGGCGGATTCCTGGGCAGCGAGCTGGCCTGCGCCTTGGGCAGGAGATctcatGATCTGGGCCTGGAGGTGATTCAGCTGTTCCCGGAGAAAGGGAACATGGGTAAAGTTCTACCTGAGTACCTGAGCAACTGGACCACAGACAAAGTGAATAAAGAGGGCGTCCAGGTGCTGACGGAAGCTGTGGTTAAGAACGTGTCCTATAAGGACGGAAAATTGGAGATAAAACTGAAAGACGGTCGACTGGTGAAGACGGATCACATCGTGGCAGCCGTGGGTTTGGAGCCCAGCATCGAGCTGGCGAAATCCGCCGGCCTGGAGATCGACTCGGACTTCGGAGGGTATCGGGTGAACGCCGAGCTGCAGGCGCGATCCAACAtctgggtggcaGGTGATGCTGCATGTTTCTATGACATCAAGCTGGGTCGGAGGCGGGTGGAGCATCATGATCACGCGGTGGTGAGCGGCAGACTCGCTGGAGAAAACATGACCGGAGCCAGAAAGCCCTACTGGCACCAGTCCATGTTCTGgagtgaCCTGGGCCCTGATGTAGGATACGAAGCCATCGGTATTGTAGACAGCAGTCTCCCAACTGTAGGAGTGTTTGCAAAAGCTACAGCCAAGGACACACCCAAAGCAGCTACTGAGcaatcaggtacAGGAATCAGGTCGGAGAGTGAGACGGAGGAGGTTGCCGGGACACTTTACACAGCTACAGCAGCTCCTGCCCCGCCCACACAGCAGGAGAATTATGGGAAAGGAGTGATCTTCTACCTGAGGGACAAAGTGGTGGTTGGCATCGTGCTGTGGAACGTCTTTAACAGGATGCCCATCGCCAGGAAGATCATTAAAGATGGAGAGGAACACGCTGATCTGAACGAGGTGGCCAAGCTGTTCAATATTCATGAAGACTAAACACACACGCTGTACTTGTGGAACCTGGGAAAAACTTCTGCAAAAAATtaccatgcgcacacacacacacacacacacacacacacacacacacacacgcacataacTCTATCAGACCTGTGGTTCTGCCTCCAGCCCTGTTGGTGGCGCTGTGGTCGTGGCTCGCTATTGGACTCGTCAGATCAGTACTGTTCCGTCTCTCCTGAAGAAAACCTGTTGTTTATACGGGGACATTGTACACGTGTTTTCTAGTGAGGTCAGTAAATGTATATTTGCAAAACGCTTGAGCCGTCCTCTCTTTCCTGGAGTCTCGACTTTTTTTGCTGCATGAGGTGTTGAAACCCCAATCAGGATCCACGGTATGCTAAGTCAGCGTTCCAGTACTGCTTTAACACACCTTTATGTTCCTTTCATGTTAACTACGCTACAGATGTGGTCACTTACaattcaaggttttttttttttattattattattttaaatgggaTATTTGAATCAATGTTTCATATGTGCTTCAGGATTTGTAATTGAAAGTAAGTATGTTACGTAAGTAAGATGTGATGTACAGGTTTGAGCGTAGCTCATAAGTATATTTACACTAGCTATGCAGCAGTTCAAACATGTTTATGATTCAGTGTTTGCATTATAAACAGCTTCATCCACCATTTTCTGGATTTGTATCACTGCCTTCTGGGTAAATTGCGATGCTGGTGTTGACTCGATCCCTCCGTGCAGTAAACCATCAACCTTGGCTTGAGCTGGAGAGGAATTAAAGGAATGCCCCTGAACAAGGGGAAGTGGTCAAGGGTGTGTTAAACAGTATTGGAACTCGGGGGCAAAGCATCTCGTACACATTTCATTGGATAAAGTTGAGCTGTTGGAGTGATTCtgattgggttttttttttaccatgagAAAAAGCTGCACAAActcctctctcatctctcctgAACCATGTGacatgatttgtttttctgagacttaattaaaacaaattatttttgaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU460769 lncRNA downstream 15923 17282100 ~ 17284601 (-) True G388698
TU460762 lncRNA downstream 97532 17202786 ~ 17202992 (-) True G388692
TU460436 lncRNA downstream 311509 16978449 ~ 16989015 (-) False G388440
TU460790 lncRNA upstream 26837 17343079 ~ 17355359 (-) True G388709
TU460855 lncRNA upstream 93761 17410003 ~ 17411908 (-) True G388754
TU460889 lncRNA upstream 235953 17552195 ~ 17552678 (-) True G388785
TU460885 lncRNA upstream 253373 17569615 ~ 17590207 (-) True G388781
TU460919 lncRNA upstream 285700 17601942 ~ 17620793 (-) True G388814
XM_034300933.1 mRNA downstream 1043 17289279 ~ 17299481 (-) False glra4b
XM_026922525.2 mRNA downstream 1047 17289073 ~ 17299477 (-) False glra4b
XM_026922524.2 mRNA downstream 1049 17289073 ~ 17299475 (-) True glra4b
XM_026922528.2 mRNA downstream 4144 17289073 ~ 17296380 (-) False glra4b
XM_026922529.2 mRNA downstream 4643 17289073 ~ 17295881 (-) False glra4b
XM_034300935.1 mRNA upstream 6820 17323062 ~ 17328055 (-) True nono
XM_026922201.2 mRNA upstream 86542 17402784 ~ 17408212 (-) True apool
XM_034300803.1 mRNA upstream 96693 17412935 ~ 17446306 (-) True si:ch211-26b3.4
XM_026921905.2 mRNA upstream 133511 17449753 ~ 17453410 (-) True si:dkey-237j10.2
XM_026921904.2 mRNA upstream 151501 17467743 ~ 17482963 (-) False LOC113531290
LOC117596251 other downstream 242642 17055583 ~ 17057882 (-) True LOC117596251
TU460427 other downstream 330498 16966288 ~ 16970026 (-) False crx
trnam-cau_51 other downstream 865254 16435198 ~ 16435270 (-) True trnam-cau_51
trnam-cau_50 other downstream 869060 16431392 ~ 16431464 (-) True trnam-cau_50
XR_003403223.2 other downstream 919737 16377585 ~ 16380787 (-) False LOC113531235
XR_004577381.1 other upstream 221193 17537435 ~ 17544583 (-) False LOC113524239
TU460953 other upstream 352126 17668368 ~ 17727818 (-) False LOC117596207
TU461266 other upstream 947238 18263480 ~ 18277958 (-) True G389092
TU461629 other upstream 1224088 18540330 ~ 18630565 (-) False fdx1b
trnap-agg_16 other upstream 1568640 18884882 ~ 18884953 (-) True trnap-agg_16

Expression Profile