RNA id: XM_026922529.2


Basic Information

Item Value
RNA id XM_026922529.2
length 1410
RNA type mRNA
GC content 0.53
exon number 9
gene id glra4b
representative False

Chromosome Information

Item Value
chromosome id NC_047621.1
NCBI id CM018567.1
chromosome length 18889892
location 17289073 ~ 17299481 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TAAAGAGGCTGTGGCCTCCTGTCAATGTCACCTGCAACATCTTCATCAACAGCTTTGGCTCTGTCACAGAAACAActatgGACTACCGCTTGAACGTGTTCCTCCGGCAGCAGTGGAACGATCCTCGCCTGGCGTATAAGGAATACCCTGACGACTCGCTCGATCTGGACCCCTCCATGCTGGACTCCATCTGGAAACCCGATCTATTCTTCGCTAACGAGAAAGGTGCCAACTTCCACGAGGTCACCACCGACAACAAGCTGCTGAGGATCTTTCAGAACGGGAACGTCCTCTACAGCATCCGgTTGACTCTGATTCTGTCCTGTCCGATGGATCTGAAGAACTTCCCCATGGACATTCAGACCTGCACCATGCAGCTAGAGAGCTTCGGCTACACCATGAACGATCTGATTTTCCAGTGGCTGGATAAAGGTCCTGTGCAGGTGGCTGATGATTTAACGATGCCGCAATTCGTTCTGAAAGAGGAGAAGGACCTGGGATACTGCACCAAGCACTACAACACcgGTAAGTTCACCTGCATCGAGGTGAAGTTCCACCTGCAGAGGCAGATGGGATATTATCTGATCCAGATGTACATTCCCAGCCTGCTGACAGTCATCCTGTCCTGGGTTTCATTCTGGATCAACATGGACGCCGCTCCTGCTCGAGTCGGCCTCGGCATCACCACCGTCCTCACCATGACAACGCAGAGCTCCGGCTCCAGGGCCTCGCTGCCCAAGgtGTCCTATGTGAAGGCAATAGATATCTGGATGGCGGTGTGTTTGCTCTTCGTCTTCGCCGCGTTGTTGGAGTATGCCGCTGTGAACTTCGTCTCTCGGCAACACAAAGAGTTCTTCAGACTCAGAAGGCGACTGCAGGAAGAGCGACGTCAAAGGGCCgcTTCAGGTCAGTTTGGTGGAGCCGAGACGAAAAGCAAGAGcaacgatgttacaggcagcacaACATCCTACAGGAACACAAAACACTGCAATGCCTgtgcacagGAGTTAGCTCAACACAATCAGGATTTCTTCTTGTCCAGTTTTGGTTTGGACGTCCACCTGTCCGGAGACGGTCCCCTCTCTGAGGCGGCGGCCATGTTTGCCTCTCTGCCTCCAGGCCACTCGCTGTTCCAGATCCGCCGCCGCTTTATCGACCGCGCCAAACGGATCGACACCATCTCGCGCGCCATCTTCCCTCTCAGCTTTCTCATCTTCAACGTCTTGTACTGGCTCACGTACAAAGTTCTGCGTAACGAGGATCTACACTCCGTCCTGTGAGTGAAGAGAACTGAAGGACACTACACCACAGCAGCGCTTTCACACCACCGTCATGGTTTCACTGAAAGAACTGAATAAATCAGCAAAGTGTGGGAGATCTCGTGGAAATAAACAAGACGCGAGGAACAGA

Function

GO:

id name namespace
GO:0006811 ion transport biological_process
GO:0045202 synapse cellular_component
GO:0005887 integral component of plasma membrane cellular_component
GO:0030054 cell junction cellular_component
GO:0022824 transmitter-gated ion channel activity molecular_function
GO:0005230 extracellular ligand-gated ion channel activity molecular_function
GO:0016594 glycine binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU460769 lncRNA downstream 4472 17282100 ~ 17284601 (-) True G388698
TU460762 lncRNA downstream 86081 17202786 ~ 17202992 (-) True G388692
TU460436 lncRNA downstream 300058 16978449 ~ 16989015 (-) False G388440
TU460790 lncRNA upstream 47198 17343079 ~ 17355359 (-) True G388709
TU460855 lncRNA upstream 114122 17410003 ~ 17411908 (-) True G388754
TU460889 lncRNA upstream 256314 17552195 ~ 17552678 (-) True G388785
TU460885 lncRNA upstream 273734 17569615 ~ 17590207 (-) True G388781
TU460919 lncRNA upstream 306061 17601942 ~ 17620793 (-) True G388814
XM_034300960.1 mRNA downstream 16466 17242034 ~ 17272607 (-) True sptbn4a
XM_026921677.2 mRNA downstream 50120 17227450 ~ 17238953 (-) True micu2
XM_034300889.1 mRNA downstream 62007 17194315 ~ 17227066 (-) True nova1
XM_034300930.1 mRNA upstream 4643 17300524 ~ 17316242 (-) False aifm1
XM_034300929.1 mRNA upstream 4643 17300524 ~ 17316242 (-) True aifm1
XM_034300932.1 mRNA upstream 4643 17300524 ~ 17316240 (-) False aifm1
XM_034300931.1 mRNA upstream 5362 17301243 ~ 17316239 (-) False aifm1
XM_034300935.1 mRNA upstream 27181 17323062 ~ 17328055 (-) True nono
LOC117596251 other downstream 231191 17055583 ~ 17057882 (-) True LOC117596251
TU460427 other downstream 319047 16966288 ~ 16970026 (-) False crx
trnam-cau_51 other downstream 853803 16435198 ~ 16435270 (-) True trnam-cau_51
trnam-cau_50 other downstream 857609 16431392 ~ 16431464 (-) True trnam-cau_50
XR_003403223.2 other downstream 908286 16377585 ~ 16380787 (-) False LOC113531235
XR_004577381.1 other upstream 241554 17537435 ~ 17544583 (-) False LOC113524239
TU460953 other upstream 372487 17668368 ~ 17727818 (-) False LOC117596207
TU461266 other upstream 967599 18263480 ~ 18277958 (-) True G389092
TU461629 other upstream 1244449 18540330 ~ 18630565 (-) False fdx1b
trnap-agg_16 other upstream 1589001 18884882 ~ 18884953 (-) True trnap-agg_16

Expression Profile