gjd1a (gjd1a,LOC108259863,LOC103027887,LOC107700241,LOC107548473,LOC108437049,LOC107746368,LOC107596136)


Basic Information

Item Value
gene id gjd1a
gene name gjd1a,LOC108259863,LOC103027887,LOC107700241,LOC107548473,LOC108437049,LOC107746368,LOC107596136
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047621.1
NCBI id CM018567.1
chromosome length 18889892
location 16908561 ~ 16927179 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026921782.2
agagagagagagagagagagagaggcaacgTGCAGGCAGAtgaaagagaaaggaggagctgagaggaggaagaggacgaCGAAGGTGTCAGCATCAGGCCcccccattcacacacacacactcacacacatttacacagacactcacacaggagaggaggagaggaagaagtgaagaaaaagacagaggaaaaggagaagaggagagagctCGGAGAACACTGCTTCCATTGCATCCTCGTTGTAGCGGACGTAGCGGCTTCCATCACAGCCGTgcccgcgtgtgtgtgtgtgtgtgtgtgtgtgcgtgtgtgtgagatatggAATCCAGAGTGCTGCATCGTCTCAGTTCAATGCTGCTAATGAAGACAGGGATGCtgcagtgactgtgtgtgtgtgtgtgtgagtgtgtgagcatgagagtgtgtgtgcatatggaGCTCTGATAGgtgcagtgctgctgctgtgtgtgaagaCGGACACAATGCGAGGACAGGAGGAACTGAGATAGAGAAGAActcaaggtgtgtgtgaaagtgtgtgtatgtgtgtgtgtgagtgagcggTGGTCCGACTCCAGCATCATCAGCATTCCTGCTGCAGAAGTACCGCTAActcatctgcacacactcacacactggcACCAGAGGCGGACGAGGGGTCGTTGCTAACGGAGACGGTCCCGGGTCAGAGGCGGTGACCCCAGTGAACAGCCGTCGGCACGGAGGCGCGCGGCAGCAGGGGCGTGAGCGAGAGAGACGGGCGGAGAGCCACCATGGGCGAGTGGACGATACTGGAGAGACTGCTGGAGGCTGCGGTGCAGCAGCACTCCACCATGATCGGGAgGATCCTGCTGACAGTGGTGGTGATCTTCCGCATCCTGATCGTGGGTATAGTGGGTGAAAAGGTGTACGAGGATGAGCAAGCCATGTTCATATGCAACACGTTGCAGCCTGGCTGCAACCAGGCATGCTACGACAAAGCCTTCCCCATCTCACACATACGCTATTGGGTGTTCCAGATCATCCTGGTGTGCACCCCAAGCCTGTGCTTCATCACCTACTCGGTGCACCAGTCAGCCAAACATAAGGACCGGCAGTACACGATCCTGCATGGGCCCTACATCGACCACGGGCACGGACCGAGCCGGAAAGTGCGCAACCTCAACGGCATCCTTGTCCATGACTCCAAGGATGAAGACATTCCGGAGCTCAAGGACATTCCAAACATCCCTTCGTGGCCTACTCGGCCCTCAAAAAGTGCCAAGGCACGGCAACAGGAGGGCATCTCACGCTTCTACGTCATCCAGGTGGTGTTCCGTAATGCCCTGGAGATCGGCTTCCTGGCCGGCCAGTACTTTCTTTACGGATTCAATGTGCCGGCGATGTTCGAGTGCGACCGCTACCCATGTGTAAAGGAGGTGGAGTGCTACGTGTCACGGCCCACTGAGAAAACCGTCTTCCTGGTGTTTATGTTCGCCGTGAGTGGCGTTTGCGTCGTGCTCAACTTGGCCGAGCTGAACCACCTGGGCTGGAGGAAGATCAAAGCGGCAGTACGTGGCGCTCAGCAGCGCAGGAAGTCCGTGTGCGAGCTCAGGAAGAAGGATGCCTCACACCTGTCCTCACTTCCCAACCTGGGGCGCACGCAGAGCAGCGAGTCGGCGTACGTCTGACGGAGAGTAGGGGAGGGGCTTAGGCGGGCATGGGCATGGATGACCAGACGGAAGCAGAAGGCACGTCCTACGATTATGACTTGATAGCATGAGACGACTTGGTATCATTTGCAGGGTCGGACAACGGGGAGGGAGGGATGGGAGAGAAAGGACAAGAAAGATGATACATGGACCTAAATGCTGGAGAGACAAATATTCTGTGGGAGTGAAAACTCTCTTAATTCAAAAATATAGACGCACGCAAGGACAATATACTCATACTCGCATAACTGTCTCCCCAAGACCCTCGGATGTCTTCCAAACAAAGCCACGTTGAAcaagaaaaacagtttttgagaAGAGAGATAGGGATGGAGAGAGGCAAAGTTGCTTAAAAGTGAGCCCAGTGATTGGAtctcttcattttaaaaatcttacaaaaaaattcaagcaaaatacaaaaagaacAAAGCAAAGAGTTGAAGCttagtctgtctctctttctctttttgtataAAGCGACAGTGTCTTTCATACGTGGAGATGAATTGTAAAAGAAAAGATTGaccgatgatgatgatgatgatgatgaaaacaaGCCCCTCCCCCTTTTACAGCAGCCGGGCAATAAGAGGACCACCCCCTTAGTTATATACTTAGACATAaccataaataaaaaagcataaacaaacACTCATTACTCCAGTTACTTCTCTTAGAGCCCTCGAGCTGCTGCCTAGAAACAACTCTGTACATATTTTGGCATTATGGTTTCTtgcattattttaatgattatttaatgcAGCTTTGTATGACTTTTGGTCCTGTATGTCCAAGTCAAGCACAGTTTCTGCTCTCGCACATCCTGTCAGAAGTcgagagattaaaaaaacatgcgttaaaaaaaacattagctctGTTGCAGGTCATGTAGATGCGCTTGACTGGAGAGGTAGCTAGAGAGTTAATGTTAGGTAGCTAACTTAGATTCCACAACCAGGTGAAATTACAGGACTTCGCAAATTCCATACTGTAATTCAATATGAAGTAAAACGTATATTCTATCTGTGCTTTGCCAAAGTTTCTCTCCTTTTGTtgtaaagtgggcggggctaacctTGAGTAAAACTTCACATGACTGATGTTGCTCATCCCTGTCaatgaacttttatttaaactatGCATTCACTATTGAATCGTCTCTTCAGGTCTGAGCAATTCAGCAAgagaaagctagctagcttgctagtatGCTAACTGTGCTAATTGAGTTGGTTGATACATGGAGAGTTTAGTTGTGTTTAGCTGCTTGAGTGGTGTAGCAATCAGTCAAGCGTGATGATTAgcatattaggccacgcccactggGATGGCGCTCTGATCAGTGAGTTTGGCTGCTGTTTGAGCAGCATTTATCATTATCTctatcttgttttgtttttatttcaattttgctggatgtttgatttaacacaagaaaacttttaatattttacatttcctgGACTTTTGGTAGCTcaatgttcttcttttttcttgttcattttAAGCAACGTACAGTTTGTTACCTCAATGATAATAACTTTATAGCGAGTAGATCTCAAGGAAAAAGATcagaaaaaatgaataatgcatgACCCCTTATGATTTCCGTAGTGTGTGAGCAGAGAAATTGCCAAACTGTCCTTGACTCAAAGTACAGGACCTCCACTGGGCTAATGGATTGCAagctttaatgttaaaaaaggaaagaaagaaagaaaatatctatattattgatgtttatttattcttttttgttctttactaAAGAAACGTGTATATTACATGataaaagaagattttttttgtttacaacaGACTTTGCGTAGCcttctgcagaaaaaaaaataccaaggCATGTTAATGACGCATTATTAGAATGGCTAGACTGTGTCCTGGGCTGTGTTTCtattttttgaaaaaacaaagggattttttttttctttttgcaccCTGTTTATGTACTCCGAAGCATGCTGAGCGGAAACTATAGCACCATGAGGATATGGGATTATGGGACCTGTGCTGAATATGGCTCTGGTATTGCAgcaataatacatatatattacaaataagaaattataagaaaaaatatatatataatgaatatatgtgaaaaaaataaaagaaataaattccCTCCATTTTGACgatgcatgcatgtgtgcgtATGTGCGTATGGTGTCAAGACATTACACCTACACCAGATTATCATTGTTTATAGGTTAGTTTGTAGGTGAACAAAGTATTTGCCCCCTCTGCAACATCCATCAATGGAAAGGACCACCACATGACCATTATTCAGCAGTACTGTTTGGCTGATAGACCTTTTTCAGCTGGCAGCGTAGGACGATGTCCAAAAGTTTTATGTCCAAAAGTTATGTTAAAATTTACGCAGGGAAAGATAATCATATTCAGACTTTGTCTATGCAGGTACTTAAGTCAAATTTCTGGGctccccattcagattatgcaaatcacctgcaTATAATTGACACCTCTAAGGTTGCCAGATATTTCTTAAGCATATTATAGAAGCATCTAGAGAACCTCCTTTTAACACCTTTAAACGTGAAAACAATGTGgtatagaaaatgcagactgaagatgGAAATAGCATTTTTTGGGAAGATGGCgagcattgaaataaatctaaaaggagtctagtatattgccaatatattgcttcgttaatttaacaaaatagcttccatattcattattcagcagcacatagaatagcacttgatccagcacagactTTTATTTGCTTTGTGTGCACAACTAAATGAAGCCACGAGATACTAAATTGAgatcattaaataataataataataataataataataataataataataataataataccaagctatttttgtttgttgaatTACTAAAATAATGCTGATGTTTTGGTTAATTCATgttctcctgtaaagaaaacagtttgaaggataagct

Function

symbol description
gjd1a Predicted to enable gap junction channel activity. Acts upstream of or within synapse assembly. Located in asymmetric synapse. Is integral component of postsynaptic membrane. Is expressed in eye. Orthologous to human GJD2 (gap junction protein delta 2).

NR:

description
PREDICTED: gap junction delta-2 protein-like

GO:

id name namespace
GO:0007154 cell communication biological_process
GO:0005922 connexin complex cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026921782.2 True 4656 mRNA 0.44 2 16908561 16927179

Neighbor

gene id symbol gene type direction distance location
nfkbib nfkbib coding downstream 18048 16883148 ~ 16890513 (-)
tppp2 LOC108259867,LOC108437044,LOC107548470,LOC107700244,LOC107746373,LOC107693436 coding downstream 36547 16867453 ~ 16872014 (-)
tagln2 tagln,tagl,LOC107700246,LOC107548469,LOC107746372,LOC107710578,LOC107596134 coding downstream 47361 16853464 ~ 16861200 (-)
rnf214 rnf214 coding downstream 69181 16832882 ~ 16839380 (-)
mpzl2b LOC108259864 coding downstream 90316 16808492 ~ 16818245 (-)
LOC113531238 NA coding upstream 24202 16951381 ~ 16955173 (-)
srsf7a LOC108260117,LOC108437054,LOC103046837,LOC105006373 coding upstream 72555 16999734 ~ 17007332 (-)
slc8a2a slc8a2 coding upstream 81345 17008524 ~ 17033818 (-)
nccrp1 nccrp1 coding upstream 108279 17035458 ~ 17039552 (-)
LOC117596250 LOC108259908,LOC108260251 coding upstream 119411 17046590 ~ 17052637 (-)
G388400 NA non-coding downstream 58157 16843993 ~ 16850404 (-)
G388408 apoa4 non-coding downstream 70513 16829748 ~ 16838048 (-)
G388359 NA non-coding downstream 209782 16646975 ~ 16698779 (-)
LOC117596255 NA non-coding downstream 219516 16687035 ~ 16689045 (-)
G388134 NA non-coding downstream 473182 16429227 ~ 16435379 (-)
G388406 NA non-coding upstream 18734 16945913 ~ 16951051 (-)
G388405 NA non-coding upstream 21796 16948975 ~ 16950536 (-)
G388440 NA non-coding upstream 51270 16978449 ~ 16989015 (-)
G388692 NA non-coding upstream 275607 17202786 ~ 17202992 (-)
G388698 LOC100304549,LOC100690460,LOC100219516,LOC106514001 non-coding upstream 354921 17282100 ~ 17284601 (-)
fxyd2 NA other downstream 145085 16758240 ~ 16763476 (-)
LOC113531235 NA other downstream 527774 16363494 ~ 16380787 (-)
gltpd2 LOC108260402 other downstream 1020502 15882338 ~ 15888059 (-)
nrgna NA other downstream 1881692 15018893 ~ 15026869 (-)
ccdc84 ccdc84 other downstream 1985171 14916662 ~ 14923390 (-)
crx crx other upstream 38787 16965966 ~ 16970026 (-)
G388705 nono,LOC103047741,LOC107672625,LOC107741185,LOC107756548 other upstream 363165 17290344 ~ 17328020 (-)
LOC113524239 NA other upstream 608248 17535427 ~ 17544583 (-)
LOC117596207 LOC108262004,LOC108262359,LOC108260034,LOC108260038 other upstream 741189 17668368 ~ 17727825 (-)
G389092 NA other upstream 947736 17874915 ~ 18277958 (-)

Expression


Co-expression Network