G389097 (msn,LOC108411308,LOC104934336,LOC101173881,LOC105927781)


Basic Information

Item Value
gene id G389097
gene name msn,LOC108411308,LOC104934336,LOC101173881,LOC105927781
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047621.1
NCBI id CM018567.1
chromosome length 18889892
location 18270160 ~ 18271974 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU461289
cTTGTTGAGCTTTCTTGGTCTGCTCTTCgatctgtctcagtctctccatcagctcctccttctccttctcaatcttctccttctccttttctgcctgctctctcttcttcttctcgttCTCCAGCatggccCTCTCCATCTTCTTGTGGTTTTTCTCCTCTTTGGCCTGCGCCTTCATCTGCTGCACCTCGATGGTGTCGGGTTTCCTGCGCCGCATGTACAGCTCGTGGTTCCCCATACAC

Function

symbol description
msn Enables several functions, including cell adhesion molecule binding activity; double-stranded RNA binding activity; and protein kinase binding activity. Involved in several processes, including cellular response to testosterone stimulus; epithelial cell differentiation; and positive regulation of macromolecule metabolic process. Located in several cellular components, including apical plasma membrane; microvillus; and pseudopodium. Colocalizes with focal adhesion. Implicated in immunodeficiency 50.

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU461289 True 242 lncRNA 0.52 2 18270160 18271974

Neighbor

gene id symbol gene type direction distance location
zc4h2 zc4h2,LOC107663226,LOC107557113 coding downstream 75672 18188605 ~ 18194488 (-)
mtmr8 mtmr8,LOC108444279 coding downstream 92963 18166620 ~ 18177197 (-)
amer1 amer1 coding downstream 106144 18158826 ~ 18164016 (-)
arhgef9a arhgef9,arhgef9a,LOC107741200,LOC107557118,LOC107597261 coding downstream 117966 18121020 ~ 18152194 (-)
tenm1 NA coding downstream 277112 17849347 ~ 17993048 (-)
stard8 stard8 coding upstream 45775 18317749 ~ 18351286 (-)
yipf6 yipf6,LOC106603310,LOC106567783,LOC107746343,LOC107596694 coding upstream 82816 18354790 ~ 18358497 (-)
ar ar coding upstream 146575 18418549 ~ 18526492 (-)
arhgap20b LOC108260054 coding upstream 307347 18579321 ~ 18604436 (-)
LOC117596266 NA coding upstream 466435 18738409 ~ 18739851 (-)
G389159 NA non-coding downstream 31653 18236024 ~ 18238507 (-)
G389137 NA non-coding downstream 37272 18198429 ~ 18232888 (-)
G389158 NA non-coding downstream 42688 18226974 ~ 18227472 (-)
G389067 NA non-coding downstream 454999 17804784 ~ 17815161 (-)
G389065 NA non-coding downstream 469007 17798882 ~ 17801153 (-)
G389163 NA non-coding upstream 42440 18314414 ~ 18353783 (-)
G389185 NA non-coding upstream 72139 18344113 ~ 18345716 (-)
G389191 NA non-coding upstream 95484 18367458 ~ 18369497 (-)
G389094 NA non-coding upstream 134114 18406088 ~ 18409912 (-)
G389203 NA non-coding upstream 140566 18412540 ~ 18413439 (-)
las1l las1l other downstream 39190 18216217 ~ 18230970 (-)
smarca1 LOC108260009,LOC103034185,LOC105028962,LOC106603320,LOC106567799 other downstream 175387 18073712 ~ 18094773 (-)
LOC117596207 LOC108262004,LOC108262359,LOC108260034,LOC108260038 other downstream 542335 17668368 ~ 17727825 (-)
LOC113524239 NA other downstream 725577 17535427 ~ 17544583 (-)
G388705 nono,LOC103047741,LOC107672625,LOC107741185,LOC107756548 other downstream 942140 17290344 ~ 17328020 (-)
fdx1b LOC108259761 other upstream 268356 18540330 ~ 18630565 (-)
efnb1 efnb1 other upstream 422962 18694936 ~ 18831812 (-)

Expression


Co-expression Network