G389158


Basic Information

Item Value
gene id G389158
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047621.1
NCBI id CM018567.1
chromosome length 18889892
location 18226974 ~ 18227472 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU461358
GGTGCAGGATGTATTAGAGGGATGATgtcattagtgcactacatagggtgcagGATGTATTAGAGGGATGATgtcattagtgcactacatagggtgcagGATGTATTAGAGGGATGATgtcattagtgcactacatagggtgcagGATGTATTAgagtgatgatgtcattagtgcactacatagggtgcagGATGTATTAGAGGGATGATgtcattagtgcactacatagggtgcagGATGTATTAGAGGGATGATGTCATTAgggcactacatagggtgcagGATGTATTAGAGGGATGATGTCATTAgggcactacatagggtgcagGATGTATTAGAG

Function

GO:

id name namespace
GO:0005886 plasma membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU461358 True 341 lncRNA 0.44 2 18226974 18227472

Neighbor

gene id symbol gene type direction distance location
zc4h2 zc4h2,LOC107663226,LOC107557113 coding downstream 32486 18188605 ~ 18194488 (-)
mtmr8 mtmr8,LOC108444279 coding downstream 49777 18166620 ~ 18177197 (-)
amer1 amer1 coding downstream 62958 18158826 ~ 18164016 (-)
arhgef9a arhgef9,arhgef9a,LOC107741200,LOC107557118,LOC107597261 coding downstream 74780 18121020 ~ 18152194 (-)
tenm1 NA coding downstream 233926 17849347 ~ 17993048 (-)
stard8 stard8 coding upstream 90277 18317749 ~ 18351286 (-)
yipf6 yipf6,LOC106603310,LOC106567783,LOC107746343,LOC107596694 coding upstream 127318 18354790 ~ 18358497 (-)
ar ar coding upstream 191077 18418549 ~ 18526492 (-)
arhgap20b LOC108260054 coding upstream 351849 18579321 ~ 18604436 (-)
LOC117596266 NA coding upstream 510937 18738409 ~ 18739851 (-)
G389067 NA non-coding downstream 411813 17804784 ~ 17815161 (-)
G389065 NA non-coding downstream 425821 17798882 ~ 17801153 (-)
G389064 NA non-coding downstream 429153 17797397 ~ 17797821 (-)
G389062 NA non-coding downstream 436668 17790027 ~ 17790306 (-)
G388875 NA non-coding downstream 467389 17759160 ~ 17759585 (-)
G389159 NA non-coding upstream 8552 18236024 ~ 18238507 (-)
G389095 NA non-coding upstream 31425 18258897 ~ 18392275 (-)
G389097 msn,LOC108411308,LOC104934336,LOC101173881,LOC105927781 non-coding upstream 42688 18270160 ~ 18271974 (-)
G389163 NA non-coding upstream 86942 18314414 ~ 18353783 (-)
G389185 NA non-coding upstream 116641 18344113 ~ 18345716 (-)
smarca1 LOC108260009,LOC103034185,LOC105028962,LOC106603320,LOC106567799 other downstream 132201 18073712 ~ 18094773 (-)
LOC117596207 LOC108262004,LOC108262359,LOC108260034,LOC108260038 other downstream 499149 17668368 ~ 17727825 (-)
LOC113524239 NA other downstream 682391 17535427 ~ 17544583 (-)
G388705 nono,LOC103047741,LOC107672625,LOC107741185,LOC107756548 other downstream 898954 17290344 ~ 17328020 (-)
crx crx other downstream 1256948 16965966 ~ 16970026 (-)
fdx1b LOC108259761 other upstream 312858 18540330 ~ 18630565 (-)
efnb1 efnb1 other upstream 467464 18694936 ~ 18831812 (-)

Expression


Co-expression Network