tmprss13b (LOC108259860)


Basic Information

Item Value
gene id tmprss13b
gene name LOC108259860
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047621.1
NCBI id CM018567.1
chromosome length 18889892
location 16769766 ~ 16780055 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026921752.2
GTGACCACACGCTGCTTGTCCAACCAGTCCAACGAGACAGAGGGACAATGTCAGAGGGAGAAAAGCAGGATAATTAAGGAAGCATTGGCTCTGTTGTAATGATGATGGTTGACACTGTGAAGTAAATGAGAGGGCAGAGAGCagtaaagggagagagagagagagagagagagagagaaagtgagagaatatTTAATGTGAAGCAGGATCGGATTTGGTCttcctttccatttttttttaaacttgctgATGGAGAACACAGAAGCCGACATAGAGCATGGTGAGAGCCCCCCACCGTACTACTTGGTGGTGAAGCCCAGTGATCCCCCTCCTCCATATACAAGGGTCCAGCCATTACCGGGCACCCCTCCAGTTGTCCCCTACTACATCAACCAACCTCTTCCTCAAGTACTTGCTCCTCATGTGCCTCAACGTATTATCACTACCACACAACAAGACCAGAGGCAGAGCAGACTGGTGGTGACACGGCACAAAAAAGCTTGCTGCTATGGAGGCTCAGGAGGCTCTATCCTTATTTTAGTTCTCATTGGAATTGCAGTCTGGTTGGGagTACGATATGGCATGTCATTGATGTCCAGAGGGAAGTCGGACATATGCCCACCCAATACCGTCGTCTGTGATGGACACAGCGATTGCCAACAGGGCAGCGACGAGACAATCTGCGTGAggtttggagaaagaaatgaacTGCAGGTCATGACCTCAAACTCCAACGGCTTCCTTCCCATCTGCTATGCTGACTGGAATCAGAACCTGTCTACCCAGACCTGTCAACAGCTCGGGTTCAGAGGAAGTTACCAGTACGGAGCCATAAGATCAACCTCAACATCATTTCTCTTTGTGAGCTCTCAATCTTCAGACACCATACAGGGAAAGCTTAAAGTCAGCACATCATGTCCTGGTCAAAAGACAGCATCTCTCCGATGCAGTGACTGCGGGCGTCCAAAGACCAGCTCGCGGATCATTGGAGGAAATGTGGCGGCTCCAGGCCAGTGGCCGTGGCAGGTCAGCCTGCATTTCAAGGGTTCTCATGTGTGCGGAGGGTCAGTGGTGTCGCAGGATTTCATAGTGAGTGCTGCACACTGCTTTCCCAGCAACCCAGCTTCCTGGCAGTTGCCTGTTAACTGGCGTGTGTACCTGGGTGTGGAATCACAGTACATGCTTCCACCACCTCATTACGTAGCTCACATCATTATACACGAGCTCTACAACCCGCACACACACGACAACGACATCGCGCTGCTCAAACTCACCAAGCCCATCAACTTCACTGGTACGGTCCAGCCTGTATGTCTCCCTACATATGACCAAGTTGTTTCTGCAGACACACAATGCTGGACAACAGGATTTGGAATAACACAAGAAGgagaaaccCTTGGTTCCAGTCAGCTCATGGAGGTAGCAGTAGATATCATTGACAGACCTTTGTGTGACAACGCCTACAAAGGACTCATCACTAATGACATGCTGTGTGCAGGAGATATGAATGGGGGGAGAGATGCCTGtcagGGTGACAGTGGAGGTCCTCTAGTGTGTCAGGAGGGCGATGGCCGCTGGTATCTCTATGGCGTGACGAGCTGGGGGAGTGGGTGTGGCCGCGTGAACAGCCCGGGTGTCTACAGCAATGTGCACAGCCTTCTCTCATGGATCCACAGCAATATggagCAAGACAGACCATGAGCACTGTGCTGTCTGAATGCACTTTACTACATCTGCAGCGGGAAGCACAAGCCTCCGCTGACATCGCTTGACATCACCACCTTCATCATGTTAGGATTTCGTCCTTTTTCCCCCCCATCACGTTTGTGCACTTTAGTTCTGACCGGAGCTGTGTTTTGTTCACTTATCATCAGGGattgttttcatttcagttctcTTTTGCACATGCATTAAGATGTGTCACATTGTGTTGTTTGCACTCTGGTGTTTGTAAGtcaggttgaaaaaaaaagcttctaaGTAAAAAGAGGCTTCTTGAATATTATGGTTTATCCATGAGTACACAAATGCCATCATTGTATGTACTGGCTGTAAGGCACCTCCCACATGAACCTTTGATTGGCTGACAGGTGATGTGGTCTCCCCTGATTGGGTCAAAAATTGTTTTTAGAAGACTACGGACCTTCTTTGGGTCTGCCGTTGACTTGCTCTGTGGTTCCACTGGTGTCCTCTAGTGCCACAACACCACTTTGGAGTACATCTTAActtaataaaagaatgaaaagttGTAGAACTCATCTTGAATTCTTTTGTACAATGGAACTGAATTGCCATTCAAACATTTCAGTTATGCAGTTACTTCATTAGCACTGTGATTGTGAGAGGCTGTGCACTCTAAACACTAAATAAAGATTTTCATTCTAA

Function

NR:

description
transmembrane protease serine 13-like

GO:

id name namespace
GO:0008233 peptidase activity molecular_function

KEGG:

id description
K09643 TMPRSS13, TMPRSS11; transmembrane protease serine 13

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026921752.2 True 2385 mRNA 0.48 13 16769766 16780055

Neighbor

gene id symbol gene type direction distance location
arhgap35b arhgap35,LOC108260288,LOC108437035,LOC107596120,LOC107734134,LOC107663410 coding downstream 13630 16744036 ~ 16756136 (-)
LOC113531483 NA coding downstream 28674 16712149 ~ 16741092 (-)
LOC113531479 NA coding downstream 66498 16694308 ~ 16703268 (-)
LOC113531175 NA coding downstream 101518 16658651 ~ 16668248 (-)
LOC113531477 NA coding downstream 138402 16625953 ~ 16631364 (-)
scn4bb LOC108259866,LOC108437026 coding upstream 9099 16789154 ~ 16803393 (-)
mpzl2b LOC108259864 coding upstream 28437 16808492 ~ 16818245 (-)
rnf214 rnf214 coding upstream 52827 16832882 ~ 16839380 (-)
tagln2 tagln,tagl,LOC107700246,LOC107548469,LOC107746372,LOC107710578,LOC107596134 coding upstream 73409 16853464 ~ 16861200 (-)
tppp2 LOC108259867,LOC108437044,LOC107548470,LOC107700244,LOC107746373,LOC107693436 coding upstream 87398 16867453 ~ 16872014 (-)
G388359 NA non-coding downstream 70987 16646975 ~ 16698779 (-)
LOC117596255 NA non-coding downstream 80721 16687035 ~ 16689045 (-)
G388134 NA non-coding downstream 334387 16429227 ~ 16435379 (-)
G388091 NA non-coding downstream 432642 16334604 ~ 16337124 (-)
G388082 NA non-coding downstream 462640 16306509 ~ 16307126 (-)
G388408 apoa4 non-coding upstream 49693 16829748 ~ 16838048 (-)
G388400 NA non-coding upstream 63938 16843993 ~ 16850404 (-)
G388406 NA non-coding upstream 165858 16945913 ~ 16951051 (-)
G388405 NA non-coding upstream 168920 16948975 ~ 16950536 (-)
G388440 NA non-coding upstream 198394 16978449 ~ 16989015 (-)
fxyd2 NA other downstream 6290 16758240 ~ 16763476 (-)
LOC113531235 NA other downstream 388979 16363494 ~ 16380787 (-)
gltpd2 LOC108260402 other downstream 881707 15882338 ~ 15888059 (-)
nrgna NA other downstream 1742897 15018893 ~ 15026869 (-)
ccdc84 ccdc84 other downstream 1846376 14916662 ~ 14923390 (-)
crx crx other upstream 185911 16965966 ~ 16970026 (-)
G388705 nono,LOC103047741,LOC107672625,LOC107741185,LOC107756548 other upstream 510289 17290344 ~ 17328020 (-)
LOC113524239 NA other upstream 755372 17535427 ~ 17544583 (-)
LOC117596207 LOC108262004,LOC108262359,LOC108260034,LOC108260038 other upstream 888313 17668368 ~ 17727825 (-)
G389092 NA other upstream 1094860 17874915 ~ 18277958 (-)

Expression


Co-expression Network