Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU459998 |
| length | 1251 |
| lncRNA type | inter_gene |
| GC content | 0.38 |
| exon number | 2 |
| gene id | G388091 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047621.1 |
| NCBI id | CM018567.1 |
| chromosome length | 18889892 |
| location | 16334604 ~ 16337124 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| id | name | namespace |
|---|---|---|
| GO:0016064 | immunoglobulin mediated immune response | biological_process |
| GO:0002250 | adaptive immune response | biological_process |
| GO:0002253 | activation of immune response | biological_process |
| GO:0072376 | protein activation cascade | biological_process |
| GO:0006956 | complement activation | biological_process |
| GO:0006958 | complement activation, classical pathway | biological_process |
| GO:0006959 | humoral immune response | biological_process |
| GO:0002443 | leukocyte mediated immunity | biological_process |
| GO:0002449 | lymphocyte mediated immunity | biological_process |
| GO:0002455 | humoral immune response mediated by circulating immunoglobulin | biological_process |
| GO:0002460 | adaptive immune response based on somatic recombination of immune receptors built from immunoglobulin superfamily domains | biological_process |
| GO:0019724 | B cell mediated immunity | biological_process |
| id | description |
|---|---|
| ko04650 | Natural killer cell mediated cytotoxicity |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU459986 | lncRNA | downstream | 27478 | 16306509 ~ 16307126 (-) | True | G388082 |
| TU459935 | lncRNA | downstream | 116444 | 16217723 ~ 16218160 (-) | True | G388039 |
| TU459934 | lncRNA | downstream | 116956 | 16217018 ~ 16217648 (-) | True | G388038 |
| TU459900 | lncRNA | downstream | 192284 | 16141926 ~ 16142320 (-) | True | G388004 |
| TU459804 | lncRNA | downstream | 216548 | 16116621 ~ 16118056 (-) | True | G387921 |
| TU460049 | lncRNA | upstream | 92103 | 16429227 ~ 16435379 (-) | True | G388134 |
| TU460340 | lncRNA | upstream | 309851 | 16646975 ~ 16698779 (-) | True | G388359 |
| XR_004577437.1 | lncRNA | upstream | 349911 | 16687035 ~ 16689045 (-) | True | LOC117596255 |
| TU460375 | lncRNA | upstream | 421116 | 16758240 ~ 16763476 (-) | True | fxyd2 |
| TU460398 | lncRNA | upstream | 492624 | 16829748 ~ 16838048 (-) | True | G388408 |
| XM_026921722.2 | mRNA | downstream | 79499 | 16240163 ~ 16255105 (-) | True | wdr44 |
| XM_034300433.1 | mRNA | downstream | 113753 | 16218761 ~ 16220851 (-) | True | armh3 |
| XM_034300834.1 | mRNA | downstream | 119286 | 16214188 ~ 16215318 (-) | True | LOC113531237 |
| XM_026921779.2 | mRNA | downstream | 194239 | 16133103 ~ 16140365 (-) | True | si:dkey-17o15.2 |
| XM_026921756.2 | mRNA | downstream | 259313 | 16069205 ~ 16075291 (-) | False | si:ch211-284e13.5 |
| XM_026921813.2 | mRNA | upstream | 26370 | 16363494 ~ 16380753 (-) | True | LOC113531235 |
| XM_026921751.2 | mRNA | upstream | 238654 | 16575778 ~ 16580533 (-) | True | chrm1b |
| XM_026922247.2 | mRNA | upstream | 288829 | 16625953 ~ 16631364 (-) | True | LOC113531477 |
| XM_026921725.2 | mRNA | upstream | 321527 | 16658651 ~ 16668248 (-) | True | LOC113531175 |
| XM_026921724.2 | mRNA | upstream | 321527 | 16658651 ~ 16668212 (-) | False | LOC113531175 |
| TU459046 | other | downstream | 1411220 | 14916662 ~ 14923384 (-) | True | ccdc84 |
| XR_003403286.1 | other | downstream | 2419107 | 13915364 ~ 13915497 (-) | True | LOC113531684 |
| XR_003403280.1 | other | downstream | 2521275 | 13813233 ~ 13813329 (-) | True | LOC113531678 |
| XR_003403212.2 | other | downstream | 4636060 | 11691234 ~ 11698544 (-) | False | LOC113531030 |
| XR_004577404.1 | other | downstream | 4707082 | 11621662 ~ 11627522 (-) | False | map1b |
| XR_003403223.2 | other | upstream | 40461 | 16377585 ~ 16380787 (-) | False | LOC113531235 |
| trnam-cau_50 | other | upstream | 94268 | 16431392 ~ 16431464 (-) | True | trnam-cau_50 |
| trnam-cau_51 | other | upstream | 98074 | 16435198 ~ 16435270 (-) | True | trnam-cau_51 |
| TU460427 | other | upstream | 629164 | 16966288 ~ 16970026 (-) | False | crx |
| LOC117596251 | other | upstream | 718459 | 17055583 ~ 17057882 (-) | True | LOC117596251 |
