RNA id: XM_026921751.2


Basic Information

Item Value
RNA id XM_026921751.2
length 2695
RNA type mRNA
GC content 0.45
exon number 2
gene id chrm1b
representative True

Chromosome Information

Item Value
chromosome id NC_047621.1
NCBI id CM018567.1
chromosome length 18889892
location 16575778 ~ 16580533 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CGCATGTGCGCTGTTCACACGTATTATGACAGTTGGCTCTGAACCTCTGGCGTGTTAGGACAGAGCTGGAGCAAGCTCATGCCCTCTCAgttgtttctgttcttttctaatCCAATAAACAGCATGCATGTTATAGAAACATGGTTAGGATAGGGCACGTTAATCGTAATACGGGTTAAAAGGGACCCAAAGTTTAGTATCCGTTGGGAAATTTCCACTGAGATTTCTAAAATAGGTGGCTGAGATATGCAAAATTCATGCCGCAGGACGAGGAAATGGTTTTTACACTTTCCACCACTGGCTGAAAGACCGACAGTCTTCTAAAATGaAGAATGAAGAATGACCACATTTTCAGAAAGCCGGTCATGCCAAAACCCCAACTCTCTGATACTCCTGAAGAATGAGCCTTTTCCTCAAGAACCTCATGTTGCATCTTGCATGGAAACATGAGCCACACCTGCGAATCCCAGGCAACCAACACGACAGTAGATCTAGGTCCACTGGGGGGCCATCAGCCTTGGGAAGTGGTTCTGATCGTTCTTGTGACTGGCACGCTCTCGTTTATCACCATCTTGGGTAACCTGTTAGTGCTCATCTCTTTCCGGCTCAACCAGCAACTAAGAACCATCAGCAACTATTATCTCTTGAGTTTGGCAGTGGCTGATTTAATCTTGGGCACAGTATCAATGAACCTCTACACAGCCAATATCATAATGGGTCGCTGGATGTTGGGACATCTAGCATGCGATCTCTGGCTAGCATTAGACTATGTAGCTAGCAATGCTTCTGTTATGAACCTCCTAGTAATCAGCTTCGACAGGTACTTTTCTGTAACCCGACCCTTAACGTATCGAACCAAACGGACACCCAGAAGAGCTGCGGTGTTGATCACGTTAGCGTGGGTGGTATCATTTGTACTATGGGCCCCTGCGATCTTGTTTTGGCCCCATTCAGAAGGAGCATTGGAGGACAAGGTGAACTGCTCTATCCCCTTTCTAACAGTGCCTTCTTTAACCTTTGGAACGGCCATAGCTGCTTTCTACCTCCCTGTCAGCATCATGATCATTCTATACTGGCGAATTTACTGGGAGATTGAGAACAGAGCAAAAGGACTTGCCAAGTTTGTCGGGTCTGTTGGTAGCAGTCAGGGTAGCTCACTGAAGATACCGAACAAGTGGTCCAACAGTACCCGAAGCAGTCTCAGTAGTTCCATTGAGACACATCCCAGAAAGGGTCCAGAGCTGGCCAGGAAAACATCAGTTGGGTGCTTTCCTGCAAGACAAAAGCAACTTCCTTTGGTTCCAGGAAATCTGTCCATGCTGCCACCACCAAGTGAAATCAATTACAGGGAGgcgtgcagcagcagcagctggaaCATTGAAGATGAGGATGACGACGATGCTGCAACATCTTCGACAAGTGAGgaagaacaaaaacaagacCACCAAACAATGACGCTGTCTGCATCAAATCCTGCAGTGATCAAGCTGAAGGATCTGCAAGTAACATCAGAGTATCAGCAGGAAATTCCAGCCTTATCTGCCCAAGTTGCAGATCCATTATCCAGCCAACCCTCCAGACCTCTTTCACTGAAAAAGAACAGACTGCTGGACCTCAGCCTCCACAAGCAGCCCAAAACCAAAAGGCGAATAAACATGATCATTCGAGAAAAGAAAGCAGCACGGACGTTGAGCGCCATCTTATTGGCTTTCATCCTGACATGGACTCCATACAACATCATGGTCTTGGCTTCTATATCGTACTGCGTCCCTGAAAAGTTGTGGCATCTGGGATACTGGTTGTGCTACGTCAACAGCACAGTTAACCCCATGTGCTATGCTCTCTGTAACGAGTCCTTCCGAGCCACTTTCAAAACACTGCTACTTTGTCGCCGTGGAGATGCCAGAAAGTGGCAAACTAGTCACCAGAGCCGTCGTGCTTCCCTGAGGCCGAATAAGTCATGTAGCACAGTGTGAATTACAGTTTTCAAAAGAACTGGAGTCTGTTTCTAAAGCTGCCCCCTCAGAGGGTTGCTCTGATTGACTGGACATCTGCAGCCCCTCGAGATTTTGCAAAAGGCATAAAAAGTTTTTAAGTCCACAATAGAGCTTGGTCTGGATAATgctaatttgtataaaaacattCCTCAGCCTCAACATGAAGGGCCAATGCACTGAACAACTTTCTcttgtttttgactttttgcCAGATATAAATGACAGGGAACATTTGGATATTTTTGGTCTGTTTACTGAAGCACTGCTATGTTATGTTTTTCGGAATCTGTGCCCAACTTTTTTCCTCCATCATCTTACAACGTATCTGCCTTGTGTCCTGCCTACCAATCTAATGTCTCAGCTGTGTGccattttaaaaagagagatgggAAAAGATGACTAAAATAACAGCTGCTCCTCTGTTTCCTATACACGGCCCCTTTGAACAATGTAGCCAAATTGTTCCACTGAGAAGATTTTTTTCCATTGGCGGTATTACTCGGGCAATGCTACAGCTCCTTCCTTGTTATGAACTCATAAGGAGATATATGatacaaaaattatttaataatttaacagaACTGTATGTTATGAGCATGTTATACTTACGTTATACAATATAAAAGGCATCTAAAAACTCAGTAAAGAGTCATGATCAAAGATCAGTGTTTGCTTTCCATGTCATAGTGAACAAGAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU460049 lncRNA downstream 140399 16429227 ~ 16435379 (-) True G388134
TU459998 lncRNA downstream 238654 16334604 ~ 16337124 (-) True G388091
TU459986 lncRNA downstream 268652 16306509 ~ 16307126 (-) True G388082
TU459935 lncRNA downstream 357618 16217723 ~ 16218160 (-) True G388039
TU459934 lncRNA downstream 358130 16217018 ~ 16217648 (-) True G388038
TU460340 lncRNA upstream 66442 16646975 ~ 16698779 (-) True G388359
XR_004577437.1 lncRNA upstream 106502 16687035 ~ 16689045 (-) True LOC117596255
TU460375 lncRNA upstream 177707 16758240 ~ 16763476 (-) True fxyd2
TU460398 lncRNA upstream 249215 16829748 ~ 16838048 (-) True G388408
TU460385 lncRNA upstream 263460 16843993 ~ 16850404 (-) True G388400
XM_026921813.2 mRNA downstream 195025 16363494 ~ 16380753 (-) True LOC113531235
XM_026921722.2 mRNA downstream 320673 16240163 ~ 16255105 (-) True wdr44
XM_034300433.1 mRNA downstream 354927 16218761 ~ 16220851 (-) True armh3
XM_034300834.1 mRNA downstream 360460 16214188 ~ 16215318 (-) True LOC113531237
XM_026921779.2 mRNA downstream 435413 16133103 ~ 16140365 (-) True si:dkey-17o15.2
XM_026922247.2 mRNA upstream 45420 16625953 ~ 16631364 (-) True LOC113531477
XM_026921725.2 mRNA upstream 78118 16658651 ~ 16668248 (-) True LOC113531175
XM_026921724.2 mRNA upstream 78118 16658651 ~ 16668212 (-) False LOC113531175
XM_034300825.1 mRNA upstream 113775 16694308 ~ 16703268 (-) True LOC113531479
XM_034300959.1 mRNA upstream 131616 16712149 ~ 16741092 (-) True LOC113531483
trnam-cau_51 other downstream 140508 16435198 ~ 16435270 (-) True trnam-cau_51
trnam-cau_50 other downstream 144314 16431392 ~ 16431464 (-) True trnam-cau_50
XR_003403223.2 other downstream 194991 16377585 ~ 16380787 (-) False LOC113531235
TU459046 other downstream 1652394 14916662 ~ 14923384 (-) True ccdc84
XR_003403286.1 other downstream 2660281 13915364 ~ 13915497 (-) True LOC113531684
TU460427 other upstream 385755 16966288 ~ 16970026 (-) False crx
LOC117596251 other upstream 475050 17055583 ~ 17057882 (-) True LOC117596251
TU460777 other upstream 709811 17290344 ~ 17328020 (-) True G388705
XR_004577381.1 other upstream 956902 17537435 ~ 17544583 (-) False LOC113524239
TU460953 other upstream 1087835 17668368 ~ 17727818 (-) False LOC117596207

Expression Profile