RNA id: XM_026921756.2


Basic Information

Item Value
RNA id XM_026921756.2
length 3612
RNA type mRNA
GC content 0.45
exon number 3
gene id si:ch211-284e13.5
representative False

Chromosome Information

Item Value
chromosome id NC_047621.1
NCBI id CM018567.1
chromosome length 18889892
location 16069205 ~ 16075292 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AGCGCAACACTGTCCTGGAAGAAGGAAGTGATGTGCTGGACGCGTCACACAatgtaaatgggaactaatggGATGTGACTTTCAcgttttgtgttttaaaaagcaaatacTCGGTTTATTTGGGAGTGGCGAGTCTCGAGTTTCAGGCTTTCAGTATGAGAAACTGCGTTTATCGTGTGAGGAGAAAGTGTTTGAAGATAAAAAAAGGGGAAATGTGTTAGCAGGTGTGTAGCTAGCTGGTCAAGTTAGCTGAATGAAAGACTGAGGTAAACTTTAGGCTCGACAAGGCTAACCAAACCGCGGTGAGGTCCACGTCCTAGTGTCAGGTGCGAAATAAGAAGTAGGCTTAGTAATTTGTTACTGTGCTgtgaggaaaagagagacattAGGTAGATTGCTAGGTCGCTAACTAGCATATTGTTTAAGCAGTGAAGAAGGAAGAGACTGTTTTGTGTAGTTATTCAGCGCGGTTATGGCACACAACCACGAAAGTTTCTCAGACTCAGGTCTGGTCGCTGAgctgtccatttctttccatgaTGAACTCACGGCGAGCATCCAAAGCGCCTTCGGTGTCGCTGGAGAGCTCGCGGTGGCCGAGGTGTCCAAACTGGTCGGGAAAGCTTTCCGCGATGTCCGCGATCAGCTGCACAAAACCCTGCTGGCCAACAGGAACCTCCAGACGAGGCTCAGCGTGGCGCAGACGGAGCTGCGCGCCGCGCAGAGCCGCACGCTGGGGACGCGGCAGACGCGCGACATCGCCGTCAACACGAGCCCGATTCTGTCCGAACCACGAATCGATTCCCAGCTGGACGTCAAAGAGACGCATGGAGACTCTCTCAGTGATTCGAATCCGCGTCGCGCAGAATCGTTTCGCGGAATCGAGTGCGCACAGGATGTTAAACCGAATCTAACAGACATAAAAGAGGACCATCATGCCATCCAGGAAAACACTTCACATTCTGATCAGGCATGCATTGGGGCAGCAACGGTACCTGGAGCTTCAGGGGTCCAGATAAAGGGCTGTATGTCCTTTGAGTCTGGTCATGCAACAAAGTTGGAGGAGGCTGATCAATGCGCTCACCCCAACTCTGATGCCGAGCAAGTGTTTAGCCCAGATTCTCTCTCAGTGGCCCAGTCAAAGTTATTGGAGGACTGGAGACCTGAACCACTGCAGCTTCAGAGCTGCCAGTCAGACTCATATGCTTCCTCTAGCAGTTCTGTTCTGGCCAATCCCTCTCTCTTCCAAGGAGACCTTCCAGGTCTGGACTTCCTTGCTTCAGCTTCCTCCAGCCAGCCAGACGCATGCCACGCACCACTCCCCCGGAGAGATGCCTCCTCCCTAACTAACCCCGCCCCTAATCCGCTTTTCCCCTTTCACAGCTCTGGACAAGGGCACACCTTAGGCCAGTCCTTTTCTATGCCGGAGGATGTGCGCAGGTATCGCAGTGTCTTGCAGTCCAAACTAGTCAGCCATCAGCACAAAAGTCCCAAACGCAGCTTGTATCCACCTGGGCGAAGTCCGTTTCGCTGTTCACAGTGCGGCCGAGACTTTAATCGCATGGAGCACCTCAAGATCCACCAAAGGATCCATACAGGCGAGAAGCCATATGCTTGTACAGAGTGCACTGCACGTTTCAGACACTCGTGGGCGCTCACGCGCCACTTCCGCATCCACACAGGCGAGAAGCCGTATTTGTGCACACAGTGTGGGAAAAGCTTCCGGAACTGCGGTGGGCTACGCTTCCATCAGAGGACACATGCCCGCAGAAGTGGCCTGACAAACATTAGACCAAATTTAGAGGGTTATGGGAGGGCATAAGAGAAAGCTTCTCTTTGGCTTCAGCCATTTTCAGGTCACTCTAATTTCTAAGCATTAAACACAAGTTTACTTGTATGAATATAACTATTCCATACAAGGGCATGGTACTATTGATATATATTCCACCAAAATCATATGACTCATCCACATTAGCAAGAAGAAAAGTGATGGTGGAATAATCATTTCTTGTGGCATAGTTTGAATTAGAGCTGTGTTTCTGGCCATGATGAAAGGTGGCAAGATGACAATCGTCAAATTAAGAATGAATTAAGATTGTATAAGtcttttacaaattatttatgaaaCTGTGACACGACAAATCCAAATGCAGTAGATTTCTTGGATCAAATATATGGTTGTCTGGTATCCCGCAGTTCTctcataatgtgtgtatatttgtgttgcATTTATGGTTGAAGACAAGCTGTGTGGACCTATgctgcctttttctttttgcgACTTgggtgtggtgtgttgtgtttgtttttgcttttgacAAATTGACTTGTGAAGTAAATTTGAGTATGATCAAAAAGTGGATTTCTTTGGTCATGGTTTTCTGAAACCAATGAATGGATACCTGGCAGCAGTTAATTACAGGAATATGACATTTCTACAGTGTATGCTGTTATACTGTTGTGACAGAGTGGTTTGATATGTGACCAGGAGGAGCAGGTAGACATTTTACTGTTCACTCTTTTAAAGCTGCTTTAAGTGCCTGACAACAAAGAGTTGACTTGAAATGTTTCCCTGTATCCAATGTGAATTTGTCTCATTCCAGACATCCTAGATATCACAACACTGGAATTAAAAAGAGTCTCTGACTGTCCTTTAGtgggatttatttattggatAGTTCATACTGACTTCTAAAGAGTTTCCAATTCTGTTAAGGATTACCTTAAACTTTActgttgtaataataaaaatatatatattgttaaggGACATACATTTAAGTGAACAgacattctgtaaaaaaaaatcaaaagatggAAAGCAGTTAGGTTTTGAGTCAGAATATACAATGTTTCCATCACTGCAGAATAATTGTTAGTTCTGAGCTTACAAAAATAGTTTGTTTTGAATAATAGTGAATATATTTGATTGCTTTCTCAGATATGCTGATCTGTCACTATGTTTAAATTTTccctttataatattttatatacagctGTGAGAGATCTCATTTGTCCAGCTCGTCAGGTTTGAAATCTCTGCCGTGCTGCTCTGGGTGCGGAGCAGGTCAGGGACCAGTACTTGTTTGTGTCCTTTACGCACTCTTGTTTGATCCTTAGGCAGATAAAACAGTATATATGCCTGCACTGTGCACAACTCACATACTTACACCCTGACTGGTGCATCATTATACTGTGACATTTGGGGCAGGCTCGGAAAAGAGGGCAGCCATACACACGGCTGTTCGGATCCCTAACTTGGTCACAGGTGAGCAGCATAGAGACAACCTGGCATGACTGGTTGGTACAGGTGCTGTCAGGGCAAGGGTACAGGCAATGCTCACACAATGGTGTGGTAGAGCACCGTGGGCACTGCTGTAGTGAAGTGGTATGTCCTGCTGGAACCACTGCAGGCTTCAGGAAGGAGGAACACTTTGGACACTGTAAATCAGACAAAAATTCATTAGAGCAGTGTCTTTGTTGCCTTTTCCTTAGATCTCAGAAATACACGTCAGTTCTGTCACACCAGAGGCTATTTGGAGCACTTTCCCTTGCAATATCATTAAATGGTTTGTAGATACAACTGTTGTATTCTcaagtctgctttttttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004577450.1 lncRNA downstream 21034 16043897 ~ 16048171 (-) False LOC117596269
XR_004577451.1 lncRNA downstream 21034 16046300 ~ 16048171 (-) True LOC117596269
TU459734 lncRNA downstream 62135 16005463 ~ 16007070 (-) True G387861
TU459679 lncRNA downstream 128503 15914215 ~ 15940702 (-) False G387809
TU459690 lncRNA downstream 184995 15882338 ~ 15884210 (-) False gltpd2
TU459776 lncRNA upstream 1895 16077186 ~ 16078011 (-) True G387897
TU459779 lncRNA upstream 4924 16080215 ~ 16082763 (-) True G387900
TU459790 lncRNA upstream 19657 16094948 ~ 16095158 (-) True G387911
TU459804 lncRNA upstream 41330 16116621 ~ 16118056 (-) True G387921
TU459900 lncRNA upstream 66635 16141926 ~ 16142320 (-) True G388004
XM_026921778.2 mRNA downstream 36690 16021513 ~ 16032515 (-) True hsd20b2
XM_026921773.2 mRNA downstream 69570 15987177 ~ 15999635 (-) False gnb2
XM_026921772.2 mRNA downstream 69570 15987177 ~ 15999635 (-) True gnb2
XM_026921775.2 mRNA downstream 72449 15987177 ~ 15996756 (-) False gnb2
XM_034300575.1 mRNA downstream 151266 15915101 ~ 15917939 (-) True LOC117596229
XM_026921779.2 mRNA upstream 57812 16133103 ~ 16140365 (-) True si:dkey-17o15.2
XM_034300834.1 mRNA upstream 138897 16214188 ~ 16215318 (-) True LOC113531237
XM_034300433.1 mRNA upstream 143470 16218761 ~ 16220851 (-) True armh3
XM_026921722.2 mRNA upstream 164872 16240163 ~ 16255105 (-) True wdr44
XM_026921813.2 mRNA upstream 288203 16363494 ~ 16380753 (-) True LOC113531235
TU459046 other downstream 1145821 14916662 ~ 14923384 (-) True ccdc84
XR_003403286.1 other downstream 2153708 13915364 ~ 13915497 (-) True LOC113531684
XR_003403280.1 other downstream 2255876 13813233 ~ 13813329 (-) True LOC113531678
XR_003403212.2 other downstream 4370661 11691234 ~ 11698544 (-) False LOC113531030
XR_004577404.1 other downstream 4441683 11621662 ~ 11627522 (-) False map1b
XR_003403223.2 other upstream 302294 16377585 ~ 16380787 (-) False LOC113531235
trnam-cau_50 other upstream 356101 16431392 ~ 16431464 (-) True trnam-cau_50
trnam-cau_51 other upstream 359907 16435198 ~ 16435270 (-) True trnam-cau_51
TU460427 other upstream 890997 16966288 ~ 16970026 (-) False crx
LOC117596251 other upstream 980292 17055583 ~ 17057882 (-) True LOC117596251

Expression Profile