RNA id: TU459734


Basic Information

Item Value
RNA id TU459734
length 1524
lncRNA type inter_gene
GC content 0.47
exon number 2
gene id G387861
representative True

Chromosome Information

Item Value
chromosome id NC_047621.1
NCBI id CM018567.1
chromosome length 18889892
location 16005463 ~ 16007070 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

aataatatcagcttttttaaacaatatcatACCACAAAGCACATTAAAGCTACAATCAGCATACGTCATGAACCACTGGCTGCCATAGACACaataaaatgaatgcattaccatttttatttgtgttgttttgctcCACAGAGGTACTGAAATGCTCGTACACATCCATAAATACAGTTCGGTTTAATCTCTAATGTCTGTGTTCACagtagactttttttatttgtttatatacattatttgtGTTGTTTCACCGCTTAAAGCTGCGGTCAGCAAATTTTAGGTCTGaccacttttttttgtaatatttgttaaCAAACAGGTTCTTATATTCCAGTCTGTATTGCTGGTCTGGTAATAATTAGAGcctcctccattttcttttatCCATCAAAGAGACCAAAGTCCCACCCACTTCTCTTGGCTCACAAGAAAGCTGGTAAATTCACAGGTCAatgttcacctagataaaggtGGTGTGAAGCGAAAGTAACCTCGACCAGATGACATTTTGTGAGTTTCATGTCTTGTgccctttccccttcagtgaattggcttttccgCTATGTgaaatttacttacatttattcTGACCACTGCTTAatctggaaaaacaaacaacaacaacaacagaaaagcgtagttttcaggtgtctcccaTATCAGCGTAGCAAGAAATCAAAAATCCTAAATGCTCCTGCTAAACCATAGATGTAGGCACCTCTGGCTTTGTTTGAGTTTTGCATTACAATACAGCATGTACAACAGCTTTAAATGAGACTGAACATTCATGGCTACTATTACGTGTTTGCAGCAGATTAACCTTCTGAACTCAGGCACATAATAACCTCAtgtttgtgtagtttttgtAGTTCAGGAAGCTTGAGCACTCAGACCAGATCCAGAGACTGGGAGTTGAGGTGTGACCAGGTGTAGGAGGCTGCCGCCGGGAGGAGCGAGAGTGCAGGGTGGGCAGGTGGAGCGGCGGAGGTGGGCGAGTGTTTGAGCCGGTGTTTCTTGAGCTGGCCCAGTTCGCGGAAGCAGCAGCCGCACTGAGCGCAGCGGTACGGCCGCTCGCCCGTGTGGATGCGCTGGTGCGTCTTCAGGCAGTAGAAGCGCCGGAAGCCTCGGCCACAGACGTTACACCGGTGCACTTTGTCAGTCGCCTCGACGGGTGGCATCAGACCCAGCGGTGCCTCCACATCGCCAGCAGACACGGGAGGCGAGATGATCTGGGGTTGACTGTTTgaacaggaagaggaagctGCAGCTATCGGCAGAGGGTCTAAAGGCTGAACTTCAGCTTCGTCTTCGACTTTCACAGAGTTCTGCTTGATCTCCTCGCTCGCGTCCATCACCTGAATGAGGCTCAGCTCGTTGACGTTACCTGCCGGAGCTCCCATCTCAAACTCGAACCTGCCGATGTCGCACGGCTCATCAGGGGCCTTCGTGGACGAACCTGCAGTGTCTTGTTCCTCCTGAGGCACTCTCCCAAAATCCTGCACTGCACCCGCAGAGGACTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU459679 lncRNA downstream 64761 15914215 ~ 15940702 (-) False G387809
TU459690 lncRNA downstream 121253 15882338 ~ 15884210 (-) False gltpd2
TU459678 lncRNA downstream 123900 15877892 ~ 15881563 (-) True G387809
TU459674 lncRNA downstream 141916 15862239 ~ 15863547 (-) True G387806
TU459607 lncRNA downstream 297840 15707420 ~ 15707623 (-) True G387752
XR_004577450.1 lncRNA upstream 36827 16043897 ~ 16048171 (-) False LOC117596269
XR_004577451.1 lncRNA upstream 39230 16046300 ~ 16048171 (-) True LOC117596269
TU459776 lncRNA upstream 70116 16077186 ~ 16078011 (-) True G387897
TU459779 lncRNA upstream 73145 16080215 ~ 16082763 (-) True G387900
TU459790 lncRNA upstream 87878 16094948 ~ 16095158 (-) True G387911
XM_026921773.2 mRNA downstream 5828 15987177 ~ 15999635 (-) False gnb2
XM_026921772.2 mRNA downstream 5828 15987177 ~ 15999635 (-) True gnb2
XM_026921775.2 mRNA downstream 8707 15987177 ~ 15996756 (-) False gnb2
XM_034300575.1 mRNA downstream 87524 15915101 ~ 15917939 (-) True LOC117596229
XM_026921784.2 mRNA downstream 117404 15882721 ~ 15888059 (-) True gltpd2
XM_026921778.2 mRNA upstream 14443 16021513 ~ 16032515 (-) True hsd20b2
XM_026921755.2 mRNA upstream 62135 16069205 ~ 16075292 (-) True si:ch211-284e13.5
XM_026921756.2 mRNA upstream 62135 16069205 ~ 16075291 (-) False si:ch211-284e13.5
XM_026921779.2 mRNA upstream 126033 16133103 ~ 16140365 (-) True si:dkey-17o15.2
XM_034300834.1 mRNA upstream 207118 16214188 ~ 16215318 (-) True LOC113531237
TU459046 other downstream 1082079 14916662 ~ 14923384 (-) True ccdc84
XR_003403286.1 other downstream 2089966 13915364 ~ 13915497 (-) True LOC113531684
XR_003403280.1 other downstream 2192134 13813233 ~ 13813329 (-) True LOC113531678
XR_003403212.2 other downstream 4306919 11691234 ~ 11698544 (-) False LOC113531030
XR_004577404.1 other downstream 4377941 11621662 ~ 11627522 (-) False map1b
XR_003403223.2 other upstream 370515 16377585 ~ 16380787 (-) False LOC113531235
trnam-cau_50 other upstream 424322 16431392 ~ 16431464 (-) True trnam-cau_50
trnam-cau_51 other upstream 428128 16435198 ~ 16435270 (-) True trnam-cau_51
TU460427 other upstream 959218 16966288 ~ 16970026 (-) False crx
LOC117596251 other upstream 1048513 17055583 ~ 17057882 (-) True LOC117596251

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
bowfin (Amia calva) TU165238 True 1380 lncRNA 0.60 2 CM030138.1 1947447 ~ 1948939 (-)