G387809


Basic Information

Item Value
gene id G387809
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047621.1
NCBI id CM018567.1
chromosome length 18889892
location 15877892 ~ 15940702 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU459678
CTTATGAAGTTTATTtcacaacaacaaacacaggCAGGAGTGTTTAATGcattaaatctgtttaatgtAGTGGATCATAGTGTAACAGTAAAATCTGACCTgtgagagcactgtgtgtgtgtgtgtgtgtgtgtatgtgtgtgtgtttgtgtgtgtttgtcaccTGCTCATGATAGGTCTATTTTAGACTCCCAAATACCATTAATGCgccctaatctctctctctctctctctctctctctctgtgctatTGTCATTcatatagagagaaaaagagaggagagagatttAGCAAGAGACAGAGGTTACAGTAATGATTTGTGAAAGTCAGACTGGATTGAGATTAAATACGCTAATTTAAATGACTGACATTCTAAGATTCTCAGCaagaaatgtctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttggaggttGCTAAATAAACCCTGTATCCGTCTATGAACTCACTTTTTCACCCTGAGCTGTATAGCTAAACGTGCTGTATTAGTTTGTGTATACTATATATGACAAAATACAGAGCACATAGGAGCATTCAATTTTCCATGTAGCTCTTaagtttgcattttatttggttaataatttcaagcttaaaacatttttttttacattccatAGCATTACATTCTTCTTTTCAAATGAGAAAGCAACAAGagtaaaaatacacactctgtttttttaagtttcgaagaaaaaaaaaattgccacaCAATCAAACCATGTATTATATATCTGACTTTCAGATGTACATAGAataatatatctatctatctatttatctatctatctatctataatgcCTAGAATATACTACATTTCATATTGCTACACTCTGACCAACTCAAAAAGGCAATCTGAAAGATAATATGCCGCGTAATATTGCTTTTTCAACGCATCACCTTTGTCATGGTTATTTGTTTTGTTAGCTGTGAAATGGCAATTAAAACTGTCAGTACAGTTTCTTCAGTGATCCAAGGGGAAAAGATCAGTTTGTCACttcaggaagaaaaaatgatgcagtTGACAAAATCCGATTTTTCTACCAGGAGgtagtgtttttaaaaatctgattttatattttaaacattgtggctatgtgtgttatgtttcaAACTCAAAAAGGTCATACCTATGTCTGAATTTGTTATGTAGCTGTCACTTTTTTCATAATATGCCAACAAGAATGGCTGTGACAGACACAGTTAATGATATGTAATACGAAACCTGTGgctcatgaatatttatgatttgGACCCCTGTGGTCTGAAAGATCAGCTATCCACTGCATTATCAAATatgcagcagagagaaagagagagagagagagagagagagagagagagaccacagGAGTcgcctccatcacacacacacacacacacacacacaattacagcaGTAAGGAATGGCGGGGTgggaacaaaaagaaaaataaaggtaAACAAAAAAAGGTGCTAAGCAgcactttgaaaacacacacatacacacacacacacagacaatgaAAACAATGAAGTTAGTATGTTCCAGAGTAAGAGAGATCAAGAAGTttacaaagaaagaatgaaagaaaacagagatcaagaaatgaacaaagaaagaatccagaaaaggaaagaaagaaagcaagcaaattaaagaaaagaaaagaaatgaaaagacgagaaaaggagaaaagatcATTTgatatgaagaaaaagaaaaaaaaaggaaaaggggatgggatgggatggagTGATGACATGCTCTCCCTGTCCTGGATTATCCAATCAGATTAACAGATTAGGCAGGTAGAGGGAGAGCACACATATCTGCTCTGCTGGAGgacacactgtgtgtgcatgtgtgtgtgtgtgtgtgcccctTAATCAAAGAGCAAAAAGGAAGTGAGACAAAATAGATGGATTTGTCTCATCCCAGGTGAGCATACTGAGAAAAAAAGTTGAGTGAAAAAAGATGAGTgcagctgtttttgttttatgtgtgGAATGATTtcttatttatgaaaaaaaaaacctaagacACTCCACTTTTCGTACTTTTCTACCATCTCTATCACTCGACTATTAACAGAGAGTGAATGCTCTCAAAAATATATAAGACATAGAACAGAATGAGGATAAAGGaaagaaatgcacacacacacacacacacacccttagtGGCATATATAACCATATATGCACGTGTGCACGCTCCATCATAAGCACACAAatcttcattttcactcatcAATCAAACTAGACCAagtgcaaatcaatacaaacaacagcatcctttttttaaaatctacatgaaatacattattatacatgcaaaactataatatattacttatttatacatttagatatatataaataagcaTAAAAAGATACACCTCATGTAAATAAGGTGTGCTGGATGGAGAACGTGTGCGTGACGTCAGCAGTGATGGTAAAATGAGAGCAAATTTTTAGAAAGAGTGCCGTGTTTTCTGGATTCTAGCGCTTTTTCGCCCTTTTAGACACAGTAGTAACATACACGTTATCATTTTTCATCTAATGTTGTCATCtggttatatttatatttataacatgtAAAAATACAACCATTAAAAGCAGCCTATACATGAACGATACAATGACTCGTGCCAATATTTTCTGATATATGGGGACACTTCGGTGGGCGGTCTCTTGTACCTGTTGGCCAATCAGAGACGAGTATTTTCCACAGCTGGTGTAAATGAAGTCAAATCGGGTGGAAAATGTAGCTAGCGTACAGCTGTATGGGTGAAATGTTCTCTATATACGTCagccatttttatatatatatataaaaacgcCCAGTTACTTATATTACGAAGCGTCATGTTTATTGATATCTGAGGAATTTCAGGGTGGAAGTAGACATCGTATACTCTGGTACACGTTGTACTTTAGAAAATATACGTATCATTAGTGTGTAAGCGTAGGAGagtattcacacacatacacactcacatgcagaAAAAAGGTGTTAACAAGAAAACTACACTCATATTTTTTAACACCCTCTCGCTCTTGATTCGTATTGTACAATTTTAATGTCGGTGTTTTGCCCCATTTTGAGTCATGTGATCTGATCAATCACACCCTTGCCATCTCTCCATCAAATCCTCACTGCTTTCGATCATAAATGTCTCTTTTACATTATAGTCATGCAGTATAAATAGATTTCTCAGATAAAATTGGTAATACTTGTAAACActcagtgtatatacacacacacacacacacaaagacacacacaaattcgGCTTATTTTTGATGACTTCAGTAACACGTTTGATCATTTGAGACTGTTGTGTCTGGTGTGTTTTTCTCGGAGCATCCTGTATACGATATGATAGAGTGCATGGGGGATGTGTGTATAAAGCagatgtatatgtgtatacacaAGAGCGTATAAAGACGGCACCGACTTCCTTCAAATTATTTTCTGGAGTTGATCCTCAGCTTGAACGAGACGCGGCCGGCAAACTTATCGCGGTCATTGTTAGTGTGGATGTTGTTGGCGATGATCTTGCACTCCACGTTCACTTCGGCGTTCAGCGTGATGTTCAGGAACTTGACGGCCACCAGAGGCTGAGAGTAGT
>TU459679
atatataaaacaaaagtcagtaacacaaaataaacattgtCTAATGTAGCTGGAATGTAGCAAAGAAAATCTTTAACCGAAACTACTGTTATAAATGGAATGAAAAAATGGAAAGTCAGAAATAACTGAATATGATTTACCATAACTGTATGCAGTTTCCATGGTGACCTACTGTTTTGATGTATTATTTAGTACAGTATTATGCATATTCCATGGGTGGTCTATTTAACATGGTAGCATAGGTTTTCTGTATGTGGTCTACTCTTTAGTTTAGTAGCACCTACATTATTTCTGTCAAATACTAGACCACCAACAACTGAGTATTAGTAGTATGGAATAGTATTACATAGTATCTAGAAGGAGTGTTACACAACGATACAATCCggacctgtatctgtatctagttagtgctccaaatatccatatccagATTCATACTcggagtgggcgtggcttaaacCAGACATTTTTACCCCTGGAAACAACCCAGATGTAGAAATGCCAGCCAGGATCAGTAAggtggctctgacagttcctcaacctcagctacatcacttgagTTCATACTTGGTCTCAATTAGAGATGTGCAATGCAGATGCTcttgcagttattatttttgtttgtacccgCCTGCGAGGTTTTCTAacgaatttagttggttctgtttcccaaaatataaacaaactagtagcctaaatGAAACCGTTGCGACTAGGCTTGGCACGATGCCAAGGTAAAGCAGGATGATTTAAATGTAGGTTGGAAAACGTAGTGTCCACAGATTTAAGCTCGACAAAATATATCACGTTGCATCTCCGAATTTGTGTAGTCCTGTATGAACCTTAATAGGCTATGTTGTCTGTGCTAAAGCCATGGACTAAAGCCAAAATGCAAACAGGGcttaaattaagaaattcatatttatatctGCATTTGTAGCCATTTAGAATACACTGTTCGTTCTGaataatatacacaatatggccaaaagtttgtggacacctgacactCAATATGTGATTTTTGATCCTCTCATTCCACATgtagtccctctttgctgtcGTAATGAcccccactcttctgggaaggctttcaacTAGATATTGGAGTGTAGCTATGGGgttttgtgctcattcagtcacaagaacATTAGTCGGAGCAGtcggagttccagttcatcccaaaggtgttcattggggttgaggtcagggttctgtgcaggccacttgagttcttccactccaactttggcaaaccatgtccaCATGGAGCTCTGTTTGTGCCCACGGGCATTATCATACTGGAATAGGTTTGGGTCTCAGGTGCCGTGAAGGAAAATCTAACACTAtatcatacaaagacatcctatacaattccatttttgtggcaacagtttggggaagaaccacatatgggtgtgacagtcaggtgtccacaaacttttggccatatagtgtatttgtatATTCAGGTACATCAGTACTATATAGTAAGGTAGTAGCTGTTGTCCTGAGTGCTCTAGTGTTTGCCATCCAGTAGTCATTACAGTCTAGTAGTATGTGCTTTCTATGGGTGGTCCACTATATGACACACTATTTAGCACATTAGTATGTAGTTTCTCAAGGGTGGTCTACAATTTTACTtcaacagtatgtttttttccccactgtgtAGTCTGCTTTCGACATACTGTTTAGTATAGTGGTAGTAGTATTGTTTCAGACATAACAAGCGTCTTTGTGCaagaaaaccaaacaaaaaaaaagttttaaAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU459678 True 3642 lncRNA 0.37 2 15877892 15881563
TU459679 False 1775 lncRNA 0.39 2 15914215 15940702

Neighbor

gene id symbol gene type direction distance location
mogat3b mogat3,LOC108259936 coding downstream 64362 15803020 ~ 15813530 (-)
LOC113531471 NA coding downstream 79529 15779012 ~ 15798363 (-)
LOC113531193 NA coding downstream 100034 15774575 ~ 15777858 (-)
LOC117596246 NA coding downstream 104756 15763936 ~ 15773136 (-)
LOC113531181 LOC108259763 coding downstream 114574 15755197 ~ 15763318 (-)
gnb2 gnb2,LOC108428986,LOC107663406,LOC107661206,LOC107746402 coding upstream 46475 15987177 ~ 15999635 (-)
hsd20b2 LOC108259770 coding upstream 80811 16021513 ~ 16032515 (-)
si:ch211-284e13.5 LOC108260368 coding upstream 128503 16069205 ~ 16075292 (-)
si:dkey-17o15.2 LOC108260112 coding upstream 192401 16133103 ~ 16140365 (-)
LOC113531237 LOC108260022,LOC108260023,LOC108259952 coding upstream 273486 16214188 ~ 16215318 (-)
G387806 NA non-coding downstream 14345 15862239 ~ 15863547 (-)
G387752 NA non-coding downstream 170269 15707420 ~ 15707623 (-)
G387601 NA non-coding downstream 307131 15570555 ~ 15570761 (-)
G387585 NA non-coding downstream 396115 15481343 ~ 15481777 (-)
G387581 aatf non-coding downstream 401803 15475599 ~ 15476089 (-)
G387861 LOC108260025 non-coding upstream 64761 16005463 ~ 16007070 (-)
LOC117596269 NA non-coding upstream 103195 16043897 ~ 16048171 (-)
G387897 si:ch211-284e13.4,LOC108260367,LOC107663370,LOC107599204,LOC107746440,LOC105906577,LOC107661201,LOC108427482 non-coding upstream 136484 16077186 ~ 16078011 (-)
G387900 LOC108260367,LOC108427482 non-coding upstream 139513 16080215 ~ 16082763 (-)
G387911 NA non-coding upstream 154246 16094948 ~ 16095158 (-)
nrgna NA other downstream 851023 15018893 ~ 15026869 (-)
ccdc84 ccdc84 other downstream 954502 14916662 ~ 14923390 (-)
selenow1 LOC103044489 other downstream 2197367 13616122 ~ 13680525 (-)
garnl3 garnl3,LOC107700942 other downstream 2986597 12807201 ~ 12891295 (-)
LOC113531030 NA other downstream 4179348 11691234 ~ 11698544 (-)
LOC113531235 NA other upstream 422792 16363494 ~ 16380787 (-)
fxyd2 NA other upstream 817538 16758240 ~ 16763476 (-)
crx crx other upstream 1025264 16965966 ~ 16970026 (-)
G388705 nono,LOC103047741,LOC107672625,LOC107741185,LOC107756548 other upstream 1349642 17290344 ~ 17328020 (-)
LOC113524239 NA other upstream 1594725 17535427 ~ 17544583 (-)

Expression


Co-expression Network