LOC113531181 (LOC108259763)


Basic Information

Item Value
gene id LOC113531181
gene name LOC108259763
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047621.1
NCBI id CM018567.1
chromosome length 18889892
location 15755197 ~ 15763318 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026921737.2
taattatttttctgattaatgatatttttaacaaGGTAAAACAAAGGTAATACTAGATAACCTTCTGAGATGCTCAGAGATGTGTGAGATTACATGAATAATGTAAACGGTGTAACACAAGCAATGCAATGAGAGGAAATATTTTAAAGTGGGACTTGTTCTCAAATGTACTGTGGAAAAATCAGTGAATATAGATGAAAGCGAAAGCATTTTTAGCTTCCTGCCTGAAAACCTGAAAACTGGCACACTAAAGCAGCAGGTGTCTGTGAGAACAACGGCAACGGATTTTATTGAATTGTAACCAGAGATGGCTGCTGCAACCAACACTGAGTTTAAACTCCTTTCCTCCCAAGACAAACGAGTTCAACTTGGCTGTGCTGTCACATTCTCATGTCATCTTTTTCCTGAAATCAGTGCTGTTGACATGGAGATCCGGTGGTTTAAGGGGACagactgtgtttgtgtctatAAGAACAGACAGGTGACAGAGGGGAGAGGCTACAAGGGCAGAGTGAGTTTATTCACTCAGGAGCTGGACAAAggaaacatctccttacagctGAGAGAGAGCCGTGAATCAGATATAGGACATTACCTGTGTCAGGTGACTGATGGAGAAAGAACAGGGATGCTTACAGTAAGACTGTGGTGGCGTCCTTTTCAAACCATAAGCAGACTCTTTCAGTGTGGTGTCATTCCCTATGTTAACATCCAGCAGTGGGGAAGAAAATGGACAGaagaggagaaaatgaaaatggaagaGTCTTCTCTGCTGACTGAATATAATACAGATGTTAAAAGCATCATGAAGGAACTTCTAAAGAAGCACAGCGCACTAGAGAAAACTGAGCAACAGTTGAAAAACACCAGGCTGGACTTAAAAAGAGCAACAGGAGAACTGGAAGATAGTACAGATCCAGACTCCTCAGGCTCTTTGTCAAAATTGGAGCCTCCAGTCATGGGTGGAGCATCATCAAGTTCAGATTCTTCACAATTGAGGCTGGTGTTGCTGGGGAGGATGGGGTCTGGAAAAAGTGCAGCAGGAAACACCATCCTGGGCAGAGAGGAGAGGAACCAGGATGTCTCAACTGCAGCTACATCTATAGCCACCCAGCAGAGTGAGAGCACACAGGGGGAGGTGGCTGGCAGGAAGGTGACTGTGGTGGACACTCCTGACTGGTTCTCTCCTGGAATCCCTCTGGAGAAAGTGAGGCAGGATGTGGGACTCTGTGTCCGTCTGTCTGCTCCGGGACCCCACGCCTTCCTCCTGGTCATACCTGTAAAGCAGCCtacaggagaggagagagggatgctggagaaaatggaggacaTTTTTGGAGAGGGATGTTGGGAGACCACCTTCCTGCTGTTCACTGTTTCTGATGAAGTTCAGAAGAAGAGCATTGCGGAGTTTATCCAATCAGGAGACCAGGAggtccagagacttgtagagaAATGTGGGAACAGGTTTCACTGTCTCAACATTAAGGAGAGTGGAGATGGTTCTCAGGTCTCAGAGCTGCTGGAGAAGATAGAGAAGATGGTAGTGCAAAATGAAGGGAGATTCCACAGTGAGATCTACCTGGATACAGAATCTGAGATtgaaaaaattatgatgtgggCTAAAGGAAAGAAGATAGCAAAAGAAGTAAGGGAAATGGAAGTGAAACTAGAGCAGGAGGTCCAGAATTCTCTGAAAAAGATAGAAGGAATGATCCAGGAGCATGAAAAAGATATCACACAGCTGAACAGTCAAATAGAAGAACTGGAAGgaaaaattaaagaagaaatggatgaagtgaaaaaagagaaactgaaaagagaAATGGAAGGAGAAATGCATAAGAGGACAAAGATTGAGAATGTAATTATAATACTGAATGAAAAGATAGAGTGGGAGAGGatagagatggaggagagactCAGACAAAAGGTAGAGGAAATCAGGAAGGCCTATGAAGGAGAGGCTAGaatggaggaagagagaaaccTTATGAAGATTATGCTTCCCAAAATCCAGAAAGATATTTTGATCTCGAAAGCAAAGATGGAGGAAGATTTCAGAGCACAGATCGAAGAGAAGGATAGAGAGCTGGAGTTACTGAAACAGGCCCTGATACAGCTTAGAGAAGAGACAAAAGAATCCATATTGGGAAAAGAGGCTCAAGAAGAGCCTGGAGAAATTGTCTCCCAAAATAAGTGTAGAAAACGTGGTGGGAGTATATGATTACTGATAATTTCCcttttgtttttacacacagtGATAAGTTTTACAATGCAAATCTATGTTTAAATCTGACACATTTGCTGGAGAGAAGACGATCTACTTTTGACTGTTGGAAACCAGCCTTATACGAAAGTGGTGGAAATGATTTTTGTTGGATTCAGTAGGAATTACTTGAGAAAAGCAGTTAGTACAGTTGCTAGACCTAACCCTCATTTTATCCTTAACTATTAGTAACTTTTCCTGTTGTTTATGATTATCAATTCTAATTTAGTGTAGTTACACCATGCTTGTCTGTAATGCTGCGTAACCGTGCATCAATGGGAGtctaataaatgttatttacaaaaGT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026921737.2 True 2576 mRNA 0.42 8 15755197 15763318

Neighbor

gene id symbol gene type direction distance location
LOC113531247 NA coding downstream 11648 15725791 ~ 15743549 (-)
LOC113531182 NA coding downstream 50402 15695470 ~ 15704795 (-)
LOC113531228 NA coding downstream 62907 15686650 ~ 15692290 (-)
tbx2a LOC108260405 coding downstream 187786 15559319 ~ 15567411 (-)
acaca acaca,LOC107691719,LOC107730320 coding downstream 227791 15486898 ~ 15527406 (-)
LOC117596246 NA coding upstream 618 15763936 ~ 15773136 (-)
LOC113531193 NA coding upstream 11257 15774575 ~ 15777858 (-)
LOC113531471 NA coding upstream 15694 15779012 ~ 15798363 (-)
mogat3b mogat3,LOC108259936 coding upstream 39702 15803020 ~ 15813530 (-)
LOC117596229 NA coding upstream 151783 15915101 ~ 15917939 (-)
G387752 NA non-coding downstream 47574 15707420 ~ 15707623 (-)
G387601 NA non-coding downstream 184436 15570555 ~ 15570761 (-)
G387585 NA non-coding downstream 273420 15481343 ~ 15481777 (-)
G387581 aatf non-coding downstream 279108 15475599 ~ 15476089 (-)
G387573 lhx1,lhx1b,LOC107728209,LOC105023804,LOC105897175,LOC106581220,LOC107603180 non-coding downstream 291422 15460919 ~ 15463775 (-)
G387806 NA non-coding upstream 98921 15862239 ~ 15863547 (-)
G387809 NA non-coding upstream 114574 15877892 ~ 15940702 (-)
G387861 LOC108260025 non-coding upstream 242145 16005463 ~ 16007070 (-)
LOC117596269 NA non-coding upstream 280579 16043897 ~ 16048171 (-)
G387897 si:ch211-284e13.4,LOC108260367,LOC107663370,LOC107599204,LOC107746440,LOC105906577,LOC107661201,LOC108427482 non-coding upstream 313868 16077186 ~ 16078011 (-)
nrgna NA other downstream 728328 15018893 ~ 15026869 (-)
ccdc84 ccdc84 other downstream 831807 14916662 ~ 14923390 (-)
selenow1 LOC103044489 other downstream 2074672 13616122 ~ 13680525 (-)
garnl3 garnl3,LOC107700942 other downstream 2863902 12807201 ~ 12891295 (-)
LOC113531030 NA other downstream 4056653 11691234 ~ 11698544 (-)
gltpd2 LOC108260402 other upstream 119020 15882338 ~ 15888059 (-)
LOC113531235 NA other upstream 600176 16363494 ~ 16380787 (-)
fxyd2 NA other upstream 994922 16758240 ~ 16763476 (-)
crx crx other upstream 1202648 16965966 ~ 16970026 (-)
G388705 nono,LOC103047741,LOC107672625,LOC107741185,LOC107756548 other upstream 1527026 17290344 ~ 17328020 (-)

Expression


Co-expression Network