G387573 (lhx1,lhx1b,LOC107728209,LOC105023804,LOC105897175,LOC106581220,LOC107603180)


Basic Information

Item Value
gene id G387573
gene name lhx1,lhx1b,LOC107728209,LOC105023804,LOC105897175,LOC106581220,LOC107603180
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047621.1
NCBI id CM018567.1
chromosome length 18889892
location 15460919 ~ 15463775 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU459389
cgcGTACTGGAGAGCAGGTTTGCGTCCTTGCCGTTGCTGTTGCTCAGGTAATCCTCTTTGCAAACGAATTTAGACTCGTCCAGGATGTAGAGCTCTTCACCGGTGGACAGTTGCTTGTTGCATATGATGCACGTGAAGCAGTTGAGGTGAAACACTTTGCTTCTGGCCTTCCGGACGAGGTCAGTAGGGGAGATGACCTGAGAGCAGCCTCCACACTTTGTGCCATATCGTCTGAAAAAAGTCCGTTTTGCAGTAAAGCCTGCCCTCTCTGGAGAAGCATTTCTCCGTTAAGTTGCACTTGCAGTCGCAGCACTGGACGCACTTGGCGTGCCACGCGCGGTCCAGCACGTTCAGGAGGAACCTGTCCAGGATGGGCCGCTCGCACCCGGCGCACTGGAGCATGTTTACACCCGAGAGTCCACAAACACGCAGAGAGCTGATGtgctacaagaaaaaaaagtgtggaagCAGAAGGTTCTTCAGTCCAAGTAGATGAGAAGTCCTTGAGAAGAGTTATTCATCAAATCCGACTTAACATCCCAAATGCGTTTTCTTGCAAAATTCGCAGCCAAAGCATCCcgagataagatgagataagataagatgagataagatgagatgaAATGAGATTGTCCAAATAGTCTACAAAAGCCTTGCATGTAGGATTAATTTGtaagcattatttttttccctattcgTCCATTTTGTCACCAATAATGCCTGTATCCTTCTGacaccaaatttaaaaaaaaaataaccaaaaatgcGCCAAAAATGAATtttcctgaacactttcctgaACTGTCAAACTGCAAACGCTGACATGCTGTCAGTCCAAATCTACAATGCTACAACCCGCTGCCTCTTTGCGTGAACACCTCTTTGCGCGCGCTTCTCCGTGCTCGTCACTT

Function

symbol description
lhx1b Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Predicted to be involved in neuron differentiation and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be active in nucleus. Is expressed in margin. Orthologous to human LHX1 (LIM homeobox 1).
lhx1 Enables sequence-specific double-stranded DNA binding activity. Predicted to be involved in several processes, including animal organ development; gastrulation; and regulation of transcription, DNA-templated. Predicted to act upstream of or within several processes, including animal organ development; mesendoderm development; and somite rostral/caudal axis specification. Predicted to be part of chromatin and protein-containing complex. Predicted to be active in nucleus.

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU459389 True 911 lncRNA 0.47 2 15460919 15463775

Neighbor

gene id symbol gene type direction distance location
mks1 mks1,LOC107728202 coding downstream 55442 15396421 ~ 15405477 (-)
cryabb cryab,LOC108259721,LOC107574702,LOC107691740 coding downstream 111713 15346565 ~ 15349206 (-)
bicdl2 LOC108259965,LOC108428730 coding downstream 121037 15331238 ~ 15339882 (-)
ufc1 ufc1,LOC107574697,LOC107691797,LOC107603203 coding downstream 147099 15311085 ~ 15313820 (-)
fdxacb1 fdxacb1 coding downstream 155045 15299475 ~ 15305874 (-)
acaca acaca,LOC107691719,LOC107730320 coding upstream 23123 15486898 ~ 15527406 (-)
tbx2a LOC108260405 coding upstream 95544 15559319 ~ 15567411 (-)
LOC113531228 NA coding upstream 222875 15686650 ~ 15692290 (-)
LOC113531182 NA coding upstream 231695 15695470 ~ 15704795 (-)
LOC113531247 NA coding upstream 262016 15725791 ~ 15743549 (-)
G387529 mrm1 non-coding downstream 53581 15405928 ~ 15407338 (-)
G387514 NA non-coding downstream 67835 15392875 ~ 15393084 (-)
G387491 NA non-coding downstream 103442 15350215 ~ 15357477 (-)
G387469 NA non-coding downstream 163013 15295447 ~ 15297906 (-)
G387467 NA non-coding downstream 178163 15282454 ~ 15282756 (-)
G387581 aatf non-coding upstream 11824 15475599 ~ 15476089 (-)
G387585 NA non-coding upstream 17568 15481343 ~ 15481777 (-)
G387601 NA non-coding upstream 106780 15570555 ~ 15570761 (-)
G387752 NA non-coding upstream 243645 15707420 ~ 15707623 (-)
G387806 NA non-coding upstream 398464 15862239 ~ 15863547 (-)
nrgna NA other downstream 434050 15018893 ~ 15026869 (-)
ccdc84 ccdc84 other downstream 537529 14916662 ~ 14923390 (-)
selenow1 LOC103044489 other downstream 1780394 13616122 ~ 13680525 (-)
garnl3 garnl3,LOC107700942 other downstream 2569624 12807201 ~ 12891295 (-)
LOC113531030 NA other downstream 3762375 11691234 ~ 11698544 (-)
gltpd2 LOC108260402 other upstream 418563 15882338 ~ 15888059 (-)
LOC113531235 NA other upstream 899719 16363494 ~ 16380787 (-)
fxyd2 NA other upstream 1294465 16758240 ~ 16763476 (-)
crx crx other upstream 1502191 16965966 ~ 16970026 (-)
G388705 nono,LOC103047741,LOC107672625,LOC107741185,LOC107756548 other upstream 1826569 17290344 ~ 17328020 (-)

Expression


Co-expression Network