G387469


Basic Information

Item Value
gene id G387469
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047621.1
NCBI id CM018567.1
chromosome length 18889892
location 15295447 ~ 15297906 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU459268
GATGAAGTGAAAACTTGGGAGAGGAGGCAGAGCAGGTCTGTAATGTaagaagagattttaaaaaatgataattaaacTTTGGAATCAAAAATGCACAGAGAGCCAATGAAGAGAAACTAggactgaaaatgaatgttATCCAGCAACCTCGTTCCCAATCACTGTCAGAATGACACCACTGTCCAAATTCCATTTTAACCTCTGACTACATCCAAGTAGAAATCCTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU459268 True 227 lncRNA 0.38 2 15295447 15297906

Neighbor

gene id symbol gene type direction distance location
alg9 alg9,LOC107691744 coding downstream 4036 15282948 ~ 15291411 (-)
ppp2r1ba ppp2r1b,LOC108260120,LOC108428700,LOC103032850 coding downstream 16701 15266100 ~ 15278746 (-)
btg4 btg4,LOC107745130,LOC107556417 coding downstream 77334 15216083 ~ 15218113 (-)
LOC113531526 hepacam,LOC108260456 coding downstream 284094 15002425 ~ 15011353 (-)
ccdc15 ccdc15 coding downstream 294017 14992398 ~ 15001430 (-)
fdxacb1 fdxacb1 coding upstream 1569 15299475 ~ 15305874 (-)
ufc1 ufc1,LOC107574697,LOC107691797,LOC107603203 coding upstream 13179 15311085 ~ 15313820 (-)
bicdl2 LOC108259965,LOC108428730 coding upstream 33332 15331238 ~ 15339882 (-)
cryabb cryab,LOC108259721,LOC107574702,LOC107691740 coding upstream 48659 15346565 ~ 15349206 (-)
mks1 mks1,LOC107728202 coding upstream 98515 15396421 ~ 15405477 (-)
G387467 NA non-coding downstream 12691 15282454 ~ 15282756 (-)
G387465 NA non-coding downstream 13395 15281848 ~ 15282052 (-)
LOC117596201 NA non-coding downstream 60713 15220780 ~ 15234734 (-)
G387434 NA non-coding downstream 90782 15198606 ~ 15204665 (-)
G387277 NA non-coding downstream 417989 14870519 ~ 14877458 (-)
G387491 NA non-coding upstream 52309 15350215 ~ 15357477 (-)
G387514 NA non-coding upstream 94969 15392875 ~ 15393084 (-)
G387529 mrm1 non-coding upstream 108022 15405928 ~ 15407338 (-)
G387573 lhx1,lhx1b,LOC107728209,LOC105023804,LOC105897175,LOC106581220,LOC107603180 non-coding upstream 163013 15460919 ~ 15463775 (-)
G387581 aatf non-coding upstream 177693 15475599 ~ 15476089 (-)
nrgna NA other downstream 268578 15018893 ~ 15026869 (-)
ccdc84 ccdc84 other downstream 372057 14916662 ~ 14923390 (-)
selenow1 LOC103044489 other downstream 1614922 13616122 ~ 13680525 (-)
garnl3 garnl3,LOC107700942 other downstream 2404152 12807201 ~ 12891295 (-)
LOC113531030 NA other downstream 3596903 11691234 ~ 11698544 (-)
gltpd2 LOC108260402 other upstream 584432 15882338 ~ 15888059 (-)
LOC113531235 NA other upstream 1065588 16363494 ~ 16380787 (-)
fxyd2 NA other upstream 1460334 16758240 ~ 16763476 (-)
crx crx other upstream 1668060 16965966 ~ 16970026 (-)
G388705 nono,LOC103047741,LOC107672625,LOC107741185,LOC107756548 other upstream 1992438 17290344 ~ 17328020 (-)

Expression


Co-expression Network