G387514


Basic Information

Item Value
gene id G387514
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047621.1
NCBI id CM018567.1
chromosome length 18889892
location 15392875 ~ 15393084 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU459314
TGATGTGTCATCACACTTGGCTCAGTGCCAAAGAAGACACCTTCCACACCAAGCACTCAAATGAAGTTCCAATAAAGCGATTTGTCTCCAATtcgatgacatcatcaacaatGAAAGCTTTCAAAAATTGCTACATAGTACAGAATCAAACCTCAGTGAAAACCACATTACCCATAATTCAAGCTGTTTGAATAGCTTACTTGTCTGAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU459314 True 210 lncRNA 0.38 1 15392875 15393084

Neighbor

gene id symbol gene type direction distance location
cryabb cryab,LOC108259721,LOC107574702,LOC107691740 coding downstream 43669 15346565 ~ 15349206 (-)
bicdl2 LOC108259965,LOC108428730 coding downstream 52993 15331238 ~ 15339882 (-)
ufc1 ufc1,LOC107574697,LOC107691797,LOC107603203 coding downstream 79055 15311085 ~ 15313820 (-)
fdxacb1 fdxacb1 coding downstream 87001 15299475 ~ 15305874 (-)
alg9 alg9,LOC107691744 coding downstream 101464 15282948 ~ 15291411 (-)
mks1 mks1,LOC107728202 coding upstream 3337 15396421 ~ 15405477 (-)
acaca acaca,LOC107691719,LOC107730320 coding upstream 93814 15486898 ~ 15527406 (-)
tbx2a LOC108260405 coding upstream 166235 15559319 ~ 15567411 (-)
LOC113531228 NA coding upstream 293566 15686650 ~ 15692290 (-)
LOC113531182 NA coding upstream 302386 15695470 ~ 15704795 (-)
G387491 NA non-coding downstream 35398 15350215 ~ 15357477 (-)
G387469 NA non-coding downstream 94969 15295447 ~ 15297906 (-)
G387467 NA non-coding downstream 110119 15282454 ~ 15282756 (-)
G387465 NA non-coding downstream 110823 15281848 ~ 15282052 (-)
LOC117596201 NA non-coding downstream 158141 15220780 ~ 15234734 (-)
G387529 mrm1 non-coding upstream 12844 15405928 ~ 15407338 (-)
G387573 lhx1,lhx1b,LOC107728209,LOC105023804,LOC105897175,LOC106581220,LOC107603180 non-coding upstream 67835 15460919 ~ 15463775 (-)
G387581 aatf non-coding upstream 82515 15475599 ~ 15476089 (-)
G387585 NA non-coding upstream 88259 15481343 ~ 15481777 (-)
G387601 NA non-coding upstream 177471 15570555 ~ 15570761 (-)
nrgna NA other downstream 366006 15018893 ~ 15026869 (-)
ccdc84 ccdc84 other downstream 469485 14916662 ~ 14923390 (-)
selenow1 LOC103044489 other downstream 1712350 13616122 ~ 13680525 (-)
garnl3 garnl3,LOC107700942 other downstream 2501580 12807201 ~ 12891295 (-)
LOC113531030 NA other downstream 3694331 11691234 ~ 11698544 (-)
gltpd2 LOC108260402 other upstream 489254 15882338 ~ 15888059 (-)
LOC113531235 NA other upstream 970410 16363494 ~ 16380787 (-)
fxyd2 NA other upstream 1365156 16758240 ~ 16763476 (-)
crx crx other upstream 1572882 16965966 ~ 16970026 (-)
G388705 nono,LOC103047741,LOC107672625,LOC107741185,LOC107756548 other upstream 1897260 17290344 ~ 17328020 (-)

Expression


Co-expression Network