fdxacb1 (fdxacb1)


Basic Information

Item Value
gene id fdxacb1
gene name fdxacb1
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047621.1
NCBI id CM018567.1
chromosome length 18889892
location 15299475 ~ 15305874 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034300758.1
CTAGTGCACTTTACAGCTtttagggaatagggaataaaGCAAATTTCGGACACAGCCCTGGCCAGTGTCATAGACGTTCATTCCATGTGGGTCACTTTAGTTAGTAGGAAACTAAATTAAAAGGTTAAAACTGATCATGACGCTCctagaaataaataagtaaatgaataaaatggagTTTTTCGGGAAGCCTGTTTCTGTGCCTCTGAGAGAAGTGTACTAGTGAAGATGTCAGAGAGGCTGGAAGTGCTCTTGGTTGGAGAAGGGAACTTCTCCTTCTCGGTGGCTGTGTGTGAATCGGGTGATGTTGAGAACATCACCGCCTCCTGCTTACAAACCGAGCAGCAAGCCGTGGCTCAGGAACACGCTGCCCACAATATCCAGCGCCTGCGAGACCGAGGCTGTACAGTGCTTTTTGAGGTGGACTGCACATGCCTAAATGAGCACGAGGTCATCCGACGCAGTGTCTACGACCGCATCATTTTCAATTTTCCTCACTGCGGGCGGAAAAGTGGAGTCAAGAAGAACCGCACTCTCCTGGCCAAATTCTTCATAAGCTGTGCTGAAGTGCTCAGGCCTGGCGGAGAAGTGCATGTGGCTCTATGCAACGGCCAAGGAGGCACTCCATGTGACAACCCGGTGAGAGAATGGCACAACAGTTGGCAGGTGGTCGCCATGGCAGCCGAGGCCGGCCTCATTCTCAGCGAGATCCGTCCTTTCGATCGTGACAGATATCAAGGTTACAAATGCACGGGTTACAGGAGTCAGGATAAAGGTTTTCATGTGGATGGGGGGCTGAACCACATTTTTACCAGGAGCCTGCCATACACAATGCCCAAGAAACTCAAAATGGACACCGCAGTCAGGAAGGAGACGGTTAGTTTTGAGCTTCCCGAGGAGTTAAGCGAATATGTAAACAGGGATTTCCTCGGTCGACAGTCATGCCATCCTGTGAAACTTGTGCTGGAGCAGTTGCTCAGAGAGATCAAATCCTCATGGCCTGTATGTTCAGTGAGCGGCAACTTTCCAGAGTTGCTCAGCTGCTCCCAAGACAAACTCCGGGCTTGCAGTTTAAACCTGAGCTCCTCTGAAGTCTACTGGATCAAGCCAATTGAGACCCGTCCCCTTGACCAATGTGAAGTTAGTGAGAAGGATTGTGAGCCAATGGAGGAGCAGCAGTTCATCAGCAGTAGCTATATGCTACGGCCATCTTTGTTAATGCATGCAGAGGAAATTATGCAGCGTGAGGATTTTAGCCCCGGAACCATCTATGCGCTAAGTGGATTGGTTTTTCAAAGAGTTCCCATCTCTCCAAAACGCTCCCCTGTTTTCCATCAGCTTCTCCTCATCGCTGTTTTACCTTCTGAATCCCAACCTGTCAAAAGCCTCCAAAATAATCTGGAAGCTTTGCTTTCTCATTATGAAGTCTCAGTTGAGAAGGAGGAACAAGGTGAGGAGCATCGAGTGTGGCTCAGTTCTCGGGAACTCCACAATTTTGGCCAAATAACTTGCGTCCCCTTTCCTCGATCTGAACTCCAGCACGGTAAAAGCTCCATTTTGACCTTGCTGTTAAATTTGGACCACCTAGCAACCCTGATCTTCTCGATCCCTGACTGGCGCCTACTGTGGACCTCGGACCCACGTTTCCTGGCAAGTTTTGAACCTGGTAGCCAGGTACCTGCCCCATTTCAGCCATTCTCACTCTACCCGCCGAGTTACACCCATGACGTGAGCTTCTGGATGGAGCCTGACACATTTGATGAACTTGACTTTCACGAGGCAGTCCGCGTAGCCACGTGGGGAGCTGTAAGGGACATACAGCTGGTAGACAGGTTCCGCCACCCCCACATGGGACACGCTAGTCTGTGCTACCGGTTGGCATACCAGTCACCGGATCGCGCCCTGTCCCGCACCCGAGTGCTCGAGCTGCAAAACCAGTTGCGCACGCTGCTGCCTCTACGCTTGAATATCACCCTCCGGTAAATATAGGAATCCTCATGAGATCAAGAACATTACGCAAGTACCTCAGTCTAAAGTAAACACGAGAGGAGCCATACCAATAATGGTTACACCCTAGATTTTCTTTTGGATTTGGGTCTAAATATCCAATTGACCCTTTTTTATACTTAACATGGACATCAATTTTACAGGTCGTATTTTTATTACAGGTTTCTTGTATCAGGTAATCTAACTTAAATGAGCTCCTAGGCTTAAAGATGATTTGTAAATTCTATAATTACTGTGTTTTCTTTGCGTGTTTTCATACTTAAGCCTTTTTGCATACCCAAGGCTGTGTGAACCAAGAGAGCATTACATCTTGTAATTAAAAAGAGTGGTATGTAGAGCTGAAAACAAACTCACAAAAATCACTGGTAAGTGAAAAAGGTAAACTATCAGCAAGTGCTCATAGTAATCACCCGAGCATGCAGATAATGGAGCCGGTGTTTATGATGAAataattgattaaataatattataaataacgggttttaaacagcattttatttttctttagtcATGATCCAGAACACATTGTATTTTCTGCAGCTCTCTTCTTTtcaccaaacaaaaaaattcattgtTTGGTGGAAAGAGTCACCATCGCTGGTTTGTTTTCACAAAACAATTCCTTCAGAGCCACAGATCACTTGTGCAAAATTGTTCTTATTGTTTTATTCGATGCATTAGTTATTTCTCTAGACGTTTCTTCATGTTACACTGAATACTTTCTGTACTTGATATATCAAATAGGCATTTCTCTGCGTGCATGACCAGCCTTAAGCCCTTAAGTAATAATCAGATGATGCCTATGCACTGAACCTAAGGGACCAAACATAAAATCTTtactttaaatcttttaaatcttTACTTATTGAACCTTTAATTTACTTGTGTTTCTTTAAAGGATGTTCATGAGGATGCTGCATGATCTTGtatatgacaaaaatgacaaaactttTACTAGTTATTTAATGATGAGTGGATTATATTTATggatatgtttataataaatat

Function

symbol description
fdxacb1 Predicted to enable rRNA (uridine-N3-)-methyltransferase activity. Predicted to be involved in rRNA base methylation. Predicted to be active in cytoplasm. Orthologous to human FDXACB1 (ferredoxin-fold anticodon binding domain containing 1).

NR:

description
ferredoxin-fold anticodon-binding domain-containing protein 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034300758.1 True 3015 mRNA 0.44 7 15299475 15305874

Neighbor

gene id symbol gene type direction distance location
alg9 alg9,LOC107691744 coding downstream 8064 15282948 ~ 15291411 (-)
ppp2r1ba ppp2r1b,LOC108260120,LOC108428700,LOC103032850 coding downstream 20729 15266100 ~ 15278746 (-)
btg4 btg4,LOC107745130,LOC107556417 coding downstream 81362 15216083 ~ 15218113 (-)
LOC113531526 hepacam,LOC108260456 coding downstream 288122 15002425 ~ 15011353 (-)
ccdc15 ccdc15 coding downstream 298045 14992398 ~ 15001430 (-)
ufc1 ufc1,LOC107574697,LOC107691797,LOC107603203 coding upstream 5211 15311085 ~ 15313820 (-)
bicdl2 LOC108259965,LOC108428730 coding upstream 25364 15331238 ~ 15339882 (-)
cryabb cryab,LOC108259721,LOC107574702,LOC107691740 coding upstream 40691 15346565 ~ 15349206 (-)
mks1 mks1,LOC107728202 coding upstream 90547 15396421 ~ 15405477 (-)
acaca acaca,LOC107691719,LOC107730320 coding upstream 181024 15486898 ~ 15527406 (-)
G387469 NA non-coding downstream 1569 15295447 ~ 15297906 (-)
G387467 NA non-coding downstream 16719 15282454 ~ 15282756 (-)
G387465 NA non-coding downstream 17423 15281848 ~ 15282052 (-)
LOC117596201 NA non-coding downstream 64741 15220780 ~ 15234734 (-)
G387434 NA non-coding downstream 94810 15198606 ~ 15204665 (-)
G387491 NA non-coding upstream 44341 15350215 ~ 15357477 (-)
G387514 NA non-coding upstream 87001 15392875 ~ 15393084 (-)
G387529 mrm1 non-coding upstream 100054 15405928 ~ 15407338 (-)
G387573 lhx1,lhx1b,LOC107728209,LOC105023804,LOC105897175,LOC106581220,LOC107603180 non-coding upstream 155045 15460919 ~ 15463775 (-)
G387581 aatf non-coding upstream 169725 15475599 ~ 15476089 (-)
nrgna NA other downstream 272606 15018893 ~ 15026869 (-)
ccdc84 ccdc84 other downstream 376085 14916662 ~ 14923390 (-)
selenow1 LOC103044489 other downstream 1618950 13616122 ~ 13680525 (-)
garnl3 garnl3,LOC107700942 other downstream 2408180 12807201 ~ 12891295 (-)
LOC113531030 NA other downstream 3600931 11691234 ~ 11698544 (-)
gltpd2 LOC108260402 other upstream 576464 15882338 ~ 15888059 (-)
LOC113531235 NA other upstream 1057620 16363494 ~ 16380787 (-)
fxyd2 NA other upstream 1452366 16758240 ~ 16763476 (-)
crx crx other upstream 1660092 16965966 ~ 16970026 (-)
G388705 nono,LOC103047741,LOC107672625,LOC107741185,LOC107756548 other upstream 1984470 17290344 ~ 17328020 (-)

Expression


Co-expression Network