ppp2r1ba (ppp2r1b,LOC108260120,LOC108428700,LOC103032850)


Basic Information

Item Value
gene id ppp2r1ba
gene name ppp2r1b,LOC108260120,LOC108428700,LOC103032850
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047621.1
NCBI id CM018567.1
chromosome length 18889892
location 15266100 ~ 15278746 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026922129.2
CAATGCCCCTGTGTGGAAACCCCGTAGCACGAACCAGCTCCGGCCATAACAACCGTAATACAAGATGGCGGGTGCCGACGGTGATGATTCTCTTTACCCCATTGCGGTGCTTATTGACGAATTAAGAAATGAAGACGTTCAGttgcGGCTGAACAGCATTAAGAAGCTCTCCACCATCGCCCTGGCGTTGGGTGTTGAAAGGACGCGCACTGAACTTCTCCCTTTCCTCACAGATACTATCTATGATGAGGACGAAGTGCTCCTTGCCCTCGCTGAGCAGCTGGGTAACTTCACCATGCTGGTTGGAGGCCCTGAATATGTGCACTGTCTCCTTCCACCGTTGGAGAGCCTGGCCACAGTGGAGGAGACAGTGGTGCGGGACAAAGCCGTGGAATCACTGCGGAAGATCTCCCATGAGCACTCACCTGTGGACCTGGAGGTGCACTTCGAGCCCCTGGTAAAACGCCTGGCCAGCGGTGACTGGTTCACCTCACGCACTTCAGCTTGTGGTCTCTTCAGCGTCTGCTACCCGCGGGTCTCCAGCACAGTCAAAGCCGAGATACGCCAGCACTTTCGTAACCTTTGCTCTGATGACACTCCGATGGTCCGCCGTGCTGCTGCGTCTAAGCTGGGCGAGTTTGCCAAAGTGTTGGAGCTGGATTACGTCAAGAGTGACATCATTTCTCTGTTCACTGCACTGGCTTCTGACGAGCAGGACTCGGTGCGTCTCCTGGCTGTGGAGGCGTGTGTGAGCATCGCAACGCTGCTGCCCCAGGAAGACCTGGAGTCTCTGGTCATGCCCACTCTTCGCCAGGCCGCCGAGGACAAGTCCTGGAGGGTGCGCTACATGGTGGCAGACAAGTTCTCTGAGTTACAAAAGGCAGTCGGTCCAGAAATCACAAAGAACGACCTTGTGCCAGCCTTCCAGAACCTTCTCAAAGACTGTGAGGCTGAAGTGCGTGCCGCTGCTGCCAATAAGGTCAAAGAATTCTGCGAGAATTTACCGGAAGACAGCCGAGAGACGATCATCATGAATCATATTCTTCCCTGCGTCAAGGAACTGGTTTCAGACACAAATCAGCACGTCAAATCAGCTCTGGCCTCAGTGATCATGGGTTTATCGACCATTCTGGGCAAGGACAATACCATTGAGCACCTGCTTCCTCTCTTCCTGGCCCAGCTCAAAGATGAGTGTCCAGAGGTGCGTCTGAACATAATCTCTAATCTGGACTGTGTGAATGAGGTCATTGGGATCCGCCAGCTCTCCCAGTCTCTTCTCCCTGCTATTGTAGAGCTAGCAGAAGATGCCAAGTGGAGGGTGCGGCTGGCCATCATTGAATACATGCCACTTCTGGCCGGCCAGCTGGGTGTGGAGTTCTTTGACGAGAAACTGAATTCCCTGTGCATGGCATGGCTTGTCGACCATGtatATGCCATCCGAGAGGCAGCCACCTGCAACCTGACGAAGCTGGTGGAGAAGTTTGGTGCAGAGTGGGCTCAGAACACTATCGTACCTAAGGTGCTGGGAATGGCCAATGACCCCAACTACCTGCATCGTATGACCACGCTCTTCTGCATCAACGCTCTATCGGAGGCGTGCGGCCAGGAGATCACCACCAAGCACATGCTCCCTGTCGTCCTGAAAATGTCCAACGATCAGGTGGCTAACGTGCGCTTCAACGTGGCCAAGTCTCTACAGAAGATCGGTCCTGTTCTGGACAGCAACTCTCTGCAGACTGAGGTAAAGCCTGTGCTGGAGAAATTGGCTGCAGACCAAGACATCGACGTCAAATACTTTGCGCAAGAGGCCATAAGTGtTCTTGCCCTGGCCTAATGGAGCCCCTGCTGAACTCCCCATCTCAAGCTGacctccaccatcatcatcatcatcatcatccaggaTCATTCATTGGACTGTTAAAAGATAGGAGGCGTGTTCTGTTTGTCGCTCTGGTATGGAAGTGCGGGAGAGGAAGCTCTGCTTTTCTCAGTATTTTTGGTTCGAGTGTCTgtctccccctttctctctcagccTCGAATGATCCTGAACATCTCACTCTCACCCTTCATTCTGACTACAGTTTGGAGGTGGTTGGAGATGGGATGTacaaatcacacatacacacatcacagtATCTTTACACAGTACCCTTACTGTTAATTAGCTTGCCTTTCTTTATGTGCTAATCTCCCCTCACTGGCAGCACTTTTAGATGTTGTCCTACTAAATGAACTGTTGTGACAAACACTTACCAGACTGTGTACCTGGTTGTCTTTTAGGAGGAACTTATGACGATGACAATGACCTAGAAGTCCCAGTAATAACTCTATATCCTTTCTAGTTTCCGTGTGCAAGCATATGGGCAGTAGTGATTCGGAGCTTGCATGGCTTGCTTTGAGTCTAGCCCTGTGCATGTCAGTGTCTGGACTGATAGAACTGCTGTTAGCATTTAGCATCTGTGTCTCACTTAGCTGCTAGTAATTCTCAACCCCTGGTTCCTCAAAGCGTTGGCTGAAGTGTTTCCATACTACGCTATGTGCGCTATCATATTCTAGCTCTCTGTCTGAACTTTTAGAGGGTTTATTGCTTATCCTTTAAAAAGGGACCATTATAAATATTTGCCTCTTGTAGCAGTACAGAGGACAGTAGTTCCCAGTGTATGAATCAGAACGTTCTCTGCTATACTGTGCCATCAACCATACTAaacctcttcacacacacacacaaaaaaaatccccttgtgtgtttatattaaacCAATCTGTGTAATACTTTGATCCTGTATTCCTAAGCTTCTGCATGACCCTCCTTTCTCAAAGGTGTACTACGCTGCAGTAGGGAGAGCTTCATTAGCGACAGGATAAATGTTATGGGTCAAGTCCATTTTCAAGCAACACACTTCCTATTTAATGTGGTTGCTTTGCCAATGAAATGTTCCTCCTCAGCTTCAGAAAACGGTCTGCAGTCCCCTTTCATTGTTGTGATTGTCGTCAGAATGTGCTTTTGGTTTTATATGAGCGTGAACTCAAGCTGTCCTTTAACAGCACAGAGAATCAATAAAGAATCTGACACAAACCA

Function

symbol description
ppp2r1b Predicted to enable protein phosphatase regulator activity. Involved in apoptotic process involved in morphogenesis and positive regulation of extrinsic apoptotic signaling pathway in absence of ligand. Located in membrane raft.

NR:

description
PREDICTED: serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform

GO: NA

KEGG:

id description
K03456 PPP2R1; serine/threonine-protein phosphatase 2A regulatory subunit A

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026922129.2 True 3079 mRNA 0.49 15 15266100 15278746

Neighbor

gene id symbol gene type direction distance location
btg4 btg4,LOC107745130,LOC107556417 coding downstream 47987 15216083 ~ 15218113 (-)
LOC113531526 hepacam,LOC108260456 coding downstream 254747 15002425 ~ 15011353 (-)
ccdc15 ccdc15 coding downstream 264670 14992398 ~ 15001430 (-)
slc37a2 slc37a2,LOC107691751 coding downstream 275322 14978672 ~ 14990778 (-)
LOC113531520 LOC108259736,LOC108427349,LOC107664292,LOC107556423,LOC107600796,LOC107712935 coding downstream 289438 14966582 ~ 14976662 (-)
alg9 alg9,LOC107691744 coding upstream 4202 15282948 ~ 15291411 (-)
fdxacb1 fdxacb1 coding upstream 20729 15299475 ~ 15305874 (-)
ufc1 ufc1,LOC107574697,LOC107691797,LOC107603203 coding upstream 32339 15311085 ~ 15313820 (-)
bicdl2 LOC108259965,LOC108428730 coding upstream 52492 15331238 ~ 15339882 (-)
cryabb cryab,LOC108259721,LOC107574702,LOC107691740 coding upstream 67819 15346565 ~ 15349206 (-)
LOC117596201 NA non-coding downstream 31366 15220780 ~ 15234734 (-)
G387434 NA non-coding downstream 61435 15198606 ~ 15204665 (-)
G387277 NA non-coding downstream 388642 14870519 ~ 14877458 (-)
G387048 NA non-coding downstream 925904 14339316 ~ 14340196 (-)
G386873 NA non-coding downstream 1335402 13930487 ~ 13930698 (-)
G387465 NA non-coding upstream 3102 15281848 ~ 15282052 (-)
G387467 NA non-coding upstream 3708 15282454 ~ 15282756 (-)
G387469 NA non-coding upstream 16701 15295447 ~ 15297906 (-)
G387491 NA non-coding upstream 71469 15350215 ~ 15357477 (-)
G387514 NA non-coding upstream 114129 15392875 ~ 15393084 (-)
nrgna NA other downstream 239231 15018893 ~ 15026869 (-)
ccdc84 ccdc84 other downstream 342710 14916662 ~ 14923390 (-)
selenow1 LOC103044489 other downstream 1585575 13616122 ~ 13680525 (-)
garnl3 garnl3,LOC107700942 other downstream 2374805 12807201 ~ 12891295 (-)
LOC113531030 NA other downstream 3567556 11691234 ~ 11698544 (-)
gltpd2 LOC108260402 other upstream 603592 15882338 ~ 15888059 (-)
LOC113531235 NA other upstream 1084748 16363494 ~ 16380787 (-)
fxyd2 NA other upstream 1479494 16758240 ~ 16763476 (-)
crx crx other upstream 1687220 16965966 ~ 16970026 (-)
G388705 nono,LOC103047741,LOC107672625,LOC107741185,LOC107756548 other upstream 2011598 17290344 ~ 17328020 (-)

Expression


Co-expression Network