LOC113531520 (LOC108259736,LOC108427349,LOC107664292,LOC107556423,LOC107600796,LOC107712935)


Basic Information

Item Value
gene id LOC113531520
gene name LOC108259736,LOC108427349,LOC107664292,LOC107556423,LOC107600796,LOC107712935
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047621.1
NCBI id CM018567.1
chromosome length 18889892
location 14966582 ~ 14976662 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026922296.2
CTCGCGCGCCCTGAATAATCCCGCGCTTTTCTCTCAGCTGCCTCAGCATCAGTGAGCTAAAAGCCTGAGGGAAGGTGgatggcacacacacagaAGCAAAGGTAGCAAtatcttaaaaaacaaaaccagaaaaatCTCAATAAAGGTCACAATGGGATCCAGCTCTTCGTCCTACGCTCCTAAAACCGTGTACCTGGACGTAGATGGCAAAGTTCAGAGGGTCATTTTCAGTCGACACTGCAGTCCGTGTGACATCAGGGAGTTGCTTTGTACGTCGTCCAACATAGCCAGAAACACGGCTATACTTTTAATAGATGCAGAAGGAGCACTGATGTCTATCGACCCCACCATGCCTACAAACTCACCTAACAACTTGTATAAAGTAGTACCCCATTCCAGTCAAGGAGGAGAGAAAGAAGACATGTTCCAGAACGTTCTCTCCCAAGTGGCAGAGCAATTCAGTCGGGCTTTCAGGATAAACGAGCTGAAGACGGAGATGACCAACAGACTGGCCATGCTGGAGAAGAGGGTCGAACTAGAAGGCCTCAAAGTGGTAGAGATTGAGAAGTGTAAGAACGATCTGAAGAAACTAAGGGATGAGGTGACCTCTAGAGGCGGAGCAAGGGTGAACTGCAATTGCAAATACAATTTCACAGATGATGGAAAGAAACTCTCTCCCAGACGTGATGTTCCAAGTTAtccaaagTACACACTTTCCCAGGAGACTATAGAGACTCTCAAGAAGCCCACCTTTGATGTATGGCACTGGGAGCATAATGAGATGTTAAGCTGTCTGGAGTACATGTATCATGATCTCGGACTAGTAAAGGAGTTTAACATGAACCCCATCACCCTTAAAAGGTGGCTGCTGGCAATCCAGGAAAATTACCGCGACAACCCGTTCCATAACTTCCGCCACTGCTTCTGTGTCAGCCAGATGATGTACGGAATGATCCACTTGTGCAACCTCCAGGAGAAGCTGACTATGACTGACATGTGCATTCTGATGACGGCAGCAGTGTGCCACGATCTTGACCATCCAGGATACAATAACACGTATCAGATTAATGCTCGGACAGAGCTGGCCGTGCGCTACAACGATATTTCCCCCCTGGAGAACCACCACTGTGCAGTGGCCTTCCAGATTCTCGCCATGCCGGAGTGCAACATCTTCGCCAACATTGAGCTTGAGTCCTTCAAACAGATAAGACAGGCCATCATTACTCTTATTCTAGCCACTGACATGGCCAGACATGGCGAGATACTAGATTCCTTCAGACAGAAAGTGGACAACTTTGACTTCACCAACGAGGAGCATGTCAAATGTCTTAAGATGGTCTTGATCAAGTGTTGCGACATCTCCAACGAGGTTAGACCAACCGAGGTAGCCGAGCCATGGGTGGACTGCCTGCTGGAGGAGTACTTCATGCAGAGTGACAGAGAAAAGTCAGAAGGTCTTCCTGTCGCTCCTTTTATGGACCGGGACAAAGTGACCAAGCCAACAGCACAAATTGGCTTCATCAAGTTTGTTCTCATCCCAATGTTTGAGACAGTCATGAAGCTTTTCCCTCAAATTGAGGAGATCATGGTGCAGCCGTTGCGAGACTCTCGTGACCACTACGAAGAACTAAAGCAGATTGATGATGCCATGTCCCAAGCccagaagaagaaaacagagagCATGTCATTAGGAGGAAAGAAGAAATAGACCCAACCTTCTGCTTCCTTGTTACAAAAAGAGAAGTTAGAAGCATAAACTGAAGTCTCATGGCAGGATGACGTAGCCTGGCTTTGTTCTGGTGTCCCATGTGCCCTTTTTCTGAGATGGAGTGGGCTTCTCCTGCCCCAGTCTCGCAAGCCTTGAACGCCCTCTCTGAGAGGACAGATTTCTCCACACCAGATAGATATAGTATTAGAGCAGATGTGAGAGGAACCTTAAGAGGGCGGTGAATCCTTTGCTTCACAAGTCAAGTGTTTCAAGATTCTACAGCACATTTTATACGGTAAGGTTGAGAGACCATAGCAGGAATGAAAATTCATTCACCTGTTTGAAGATGTGAAGTGTTAACAGCTGAAAAGGTGATTGTCTGGTGTTATGATAAAGGAAGAATTTTGAGTAGTTTAAAGGTATTAAGGGAAAACAATCAAAtggttttcatttctttatagATTTCTATATGTTTTTGACCCTTACGATTAAGTTGGGGTATGAGAACGTATTATGGAGTAAGAATAAACAAGAAAAGTAGAATGCGATTTCATAGCCACGGGGCATTCAGACATCTATGAACACCAAAGAGAACAAAAACTGAATGTGGAGTTCCACTTTTGAGGGTATTTAGTAGTTTCAAAATCAGTCGAGCACAcaacacagaaatatataatatatatattatatatatacatattagtgttattattacTGACAGTTTAAGTGGCTAAAATCTCACACCCAGATTTACTTTCTTAATAACAAGTCACAAGTTTGATTACACAGATATGCCAAAAATTGATCATTTGATGGATTTGTACACATGCTTGTGAAGTGGTGGAAATCTTCAAATGGCACCAGAAATTTGACATTTAGTTCAAAGATACCTTAGAAAATACACTTCTAAGGATGTGCCTCATtttatacatacaatataatttaagaactaatctatttttaaatatgatgaCTGAAGGAAATTGATTTACGTGTGTTGCCCGAAATTTAGTGAACCTTAATGTTTACTTGACCAGAATGTTGAATCCTCAAGGTATTAtattgctttgctttttttgcaATTAGATTGTTGTTTctagtatttttcattttaatcgTGTTAtaaggtttttactttaatgttcTGGCTGCAATGAACcaataaagtaattaattaaatagtaAAACGTGTCAAAGCTCACACCATGTTATACagttctatttatttatgcaatgaACGCATTGCAAGATGtatcatatttacatattttcccAGTAGAGTGTAAAAGCATTggctaatttgtttttaatttttaattaattatatatatatatatatatataatttttattttacacaaattaaaatatgttagA
>XM_034300509.1
TGGCCCTTACACTAGCTTCTCCCTGTGTCTTGACAGGTCCTGAGGTTAGTAGATACAATAACAGTATTGTTTGCTTTCATTTCTCAACATTATTTTCaagtttctttttcattttgaagtCATTTTCCGACTTGTTTTCTGAGaAGCAAAGGTAGCAAtatcttaaaaaacaaaaccagaaaaatCTCAATAAAGGTCACAATGGGATCCAGCTCTTCGTCCTACGCTCCTAAAACCGTGTACCTGGACGTAGATGGCAAAGTTCAGAGGGTCATTTTCAGTCGACACTGCAGTCCGTGTGACATCAGGGAGTTGCTTTGTACGTCGTCCAACATAGCCAGAAACACGGCTATACTTTTAATAGATGCAGAAGGAGCACTGATGTCTATCGACCCCACCATGCCTACAAACTCACCTAACAACTTGTATAAAGTAGTACCCCATTCCAGTCAAGGAGGAGAGAAAGAAGACATGTTCCAGAACGTTCTCTCCCAAGTGGCAGAGCAATTCAGTCGGGCTTTCAGGATAAACGAGCTGAAGACGGAGATGACCAACAGACTGGCCATGCTGGAGAAGAGGGTCGAACTAGAAGGCCTCAAAGTGGTAGAGATTGAGAAGTGTAAGAACGATCTGAAGAAACTAAGGGATGAGGTGACCTCTAGAGGCGGAGCAAGGGTGAACTGCAATTGCAAATACAATTTCACAGATGATGGAAAGAAACTCTCTCCCAGACGTGATGTTCCAAGTTAtccaaagTACACACTTTCCCAGGAGACTATAGAGACTCTCAAGAAGCCCACCTTTGATGTATGGCACTGGGAGCATAATGAGATGTTAAGCTGTCTGGAGTACATGTATCATGATCTCGGACTAGTAAAGGAGTTTAACATGAACCCCATCACCCTTAAAAGGTGGCTGCTGGCAATCCAGGAAAATTACCGCGACAACCCGTTCCATAACTTCCGCCACTGCTTCTGTGTCAGCCAGATGATGTACGGAATGATCCACTTGTGCAACCTCCAGGAGAAGCTGACTATGACTGACATGTGCATTCTGATGACGGCAGCAGTGTGCCACGATCTTGACCATCCAGGATACAATAACACGTATCAGATTAATGCTCGGACAGAGCTGGCCGTGCGCTACAACGATATTTCCCCCCTGGAGAACCACCACTGTGCAGTGGCCTTCCAGATTCTCGCCATGCCGGAGTGCAACATCTTCGCCAACATTGAGCTTGAGTCCTTCAAACAGATAAGACAGGCCATCATTACTCTTATTCTAGCCACTGACATGGCCAGACATGGCGAGATACTAGATTCCTTCAGACAGAAAGTGGACAACTTTGACTTCACCAACGAGGAGCATGTCAAATGTCTTAAGATGGTCTTGATCAAGTGTTGCGACATCTCCAACGAGGTTAGACCAACCGAGGTAGCCGAGCCATGGGTGGACTGCCTGCTGGAGGAGTACTTCATGCAGAGTGACAGAGAAAAGTCAGAAGGTCTTCCTGTCGCTCCTTTTATGGACCGGGACAAAGTGACCAAGCCAACAGCACAAATTGGCTTCATCAAGTTTGTTCTCATCCCAATGTTTGAGACAGTCATGAAGCTTTTCCCTCAAATTGAGGAGATCATGGTGCAGCCGTTGCGAGACTCTCGTGACCACTACGAAGAACTAAAGCAGATTGATGATGCCATGTCCCAAGCccagaagaagaaaacagagagCATGTCATTAGGAGGAAAGAAGAAATAGACCCAACCTTCTGCTTCCTTGTTACAAAAAGAGAAGTTAGAAGCATAAACTGAAGTCTCATGGCAGGATGACGTAGCCTGGCTTTGTTCTGGTGTCCCATGTGCCCTTTTTCTGAGATGGAGTGGGCTTCTCCTGCCCCAGTCTCGCAAGCCTTGAACGCCCTCTCTGAGAGGACAGATTTCTCCACACCAGATAGATATAGTATTAGAGCAGATGTGAGAGGAACCTTAAGAGGGCGGTGAATCCTTTGCTTCACAAGTCAAGTGTTTCAAGATTCTACAGCACATTTTATACGGTAAGGTTGAGAGACCATAGCAGGAATGAAAATTCATTCACCTGTTTGAAGATGTGAAGTGTTAACAGCTGAAAAGGTGATTGTCTGGTGTTATGATAAAGGAAGAATTTTGAGTAGTTTAAAGGTATTAAGGGAAAACAATCAAAtggttttcatttctttatagATTTCTATATGTTTTTGACCCTTACGATTAAGTTGGGGTATGAGAACGTATTATGGAGTAAGAATAAACAAGAAAAGTAGAATGCGATTTCATAGCCACGGGGCATTCAGACATCTATGAACACCAAAGAGAACAAAAACTGAATGTGGAGTTCCACTTTTGAGGGTATTTAGTAGTTTCAAAATCAGTCGAGCACAcaacacagaaatatataatatatatattatatatatacatattagtgttattattacTGACAGTTTAAGTGGCTAAAATCTCACACCCAGATTTACTTTCTTAATAACAAGTCACAAGTTTGATTACACAGATATGCCAAAAATTGATCATTTGATGGATTTGTACACATGCTTGTGAAGTGGTGGAAATCTTCAAATGGCACCAGAAATTTGACATTTAGTTCAAAGATACCTTAGAAAATACACTTCTAAGGATGTGCCTCATtttatacatacaatataatttaagaactaatctatttttaaatatgatgaCTGAAGGAAATTGATTTACGTGTGTTGCCCGAAATTTAGTGAACCTTAATGTTTACTTGACCAGAATGTTGAATCCTCAAGGTATTAtattgctttgctttttttgcaATTAGATTGTTGTTTctagtatttttcattttaatcgTGTTAtaaggtttttactttaatgttcTGGCTGCAATGAACcaataaagtaattaattaaatagtaAAACGTGTCAAAGCTCACACCATGTTATACagttctatttatttatgcaatgaACGCATTGCAAGATGtatcatatttacatattttcccAGTAGAGTGTAAAAGCATTggctaatttgtttttaatttttaattaattatatatatatatatatatataatttttattttacacaaattaaaatatgttagA
>XM_034300510.1
CTCGCGCGCCCTGAATAATCCCGCGCTTTTCTCTCAGCTGCCTCAGCATCAGTGAGCTAAAAGCCTGAGGGAAGGTGgatggcacacacacagaAGCAAAGGTAGCAAtatcttaaaaaacaaaaccagaaaaatCTCAATAAAGGTCACAATGGGATCCAGCTCTTCGTCCTACGCTCCTAAAACCGTGTACCTGGACGTAGATGGCAAAGTTCAGAGGGTCATTTTCAGTCGACACTGCAGTCCGTGTGACATCAGGGAGTTGCTTTGTACGTCGTCCAACATAGCCAGAAACACGGCTATACTTTTAATAGATGCAGAAGGAGCACTGATGTCTATCGACCCCACCATGCCTACAAACTCACCTAACAACTTGTATAAAGTAGTACCCCATTCCAGTCAAGGAGGAGAGAAAGAAGACATGTTCCAGAACGTTCTCTCCCAAGTGGCAGAGCAATTCAGTCGGGCTTTCAGGATAAACGAGCTGAAGACGGAGATGACCAACAGACTGGCCATGCTGGAGAAGAGGGTCGAACAAGGCCTCAAAGTGGTAGAGATTGAGAAGTGTAAGAACGATCTGAAGAAACTAAGGGATGAGGTGACCTCTAGAGGCGGAGCAAGGGTGAACTGCAATTGCAAATACAATTTCACAGATGATGGAAAGAAACTCTCTCCCAGACGTGATGTTCCAAGTTAtccaaagTACACACTTTCCCAGGAGACTATAGAGACTCTCAAGAAGCCCACCTTTGATGTATGGCACTGGGAGCATAATGAGATGTTAAGCTGTCTGGAGTACATGTATCATGATCTCGGACTAGTAAAGGAGTTTAACATGAACCCCATCACCCTTAAAAGGTGGCTGCTGGCAATCCAGGAAAATTACCGCGACAACCCGTTCCATAACTTCCGCCACTGCTTCTGTGTCAGCCAGATGATGTACGGAATGATCCACTTGTGCAACCTCCAGGAGAAGCTGACTATGACTGACATGTGCATTCTGATGACGGCAGCAGTGTGCCACGATCTTGACCATCCAGGATACAATAACACGTATCAGATTAATGCTCGGACAGAGCTGGCCGTGCGCTACAACGATATTTCCCCCCTGGAGAACCACCACTGTGCAGTGGCCTTCCAGATTCTCGCCATGCCGGAGTGCAACATCTTCGCCAACATTGAGCTTGAGTCCTTCAAACAGATAAGACAGGCCATCATTACTCTTATTCTAGCCACTGACATGGCCAGACATGGCGAGATACTAGATTCCTTCAGACAGAAAGTGGACAACTTTGACTTCACCAACGAGGAGCATGTCAAATGTCTTAAGATGGTCTTGATCAAGTGTTGCGACATCTCCAACGAGGTTAGACCAACCGAGGTAGCCGAGCCATGGGTGGACTGCCTGCTGGAGGAGTACTTCATGCAGAGTGACAGAGAAAAGTCAGAAGGTCTTCCTGTCGCTCCTTTTATGGACCGGGACAAAGTGACCAAGCCAACAGCACAAATTGGCTTCATCAAGTTTGTTCTCATCCCAATGTTTGAGACAGTCATGAAGCTTTTCCCTCAAATTGAGGAGATCATGGTGCAGCCGTTGCGAGACTCTCGTGACCACTACGAAGAACTAAAGCAGATTGATGATGCCATGTCCCAAGCccagaagaagaaaacagagagCATGTCATTAGGAGGAAAGAAGAAATAGACCCAACCTTCTGCTTCCTTGTTACAAAAAGAGAAGTTAGAAGCATAAACTGAAGTCTCATGGCAGGATGACGTAGCCTGGCTTTGTTCTGGTGTCCCATGTGCCCTTTTTCTGAGATGGAGTGGGCTTCTCCTGCCCCAGTCTCGCAAGCCTTGAACGCCCTCTCTGAGAGGACAGATTTCTCCACACCAGATAGATATAGTATTAGAGCAGATGTGAGAGGAACCTTAAGAGGGCGGTGAATCCTTTGCTTCACAAGTCAAGTGTTTCAAGATTCTACAGCACATTTTATACGGTAAGGTTGAGAGACCATAGCAGGAATGAAAATTCATTCACCTGTTTGAAGATGTGAAGTGTTAACAGCTGAAAAGGTGATTGTCTGGTGTTATGATAAAGGAAGAATTTTGAGTAGTTTAAAGGTATTAAGGGAAAACAATCAAAtggttttcatttctttatagATTTCTATATGTTTTTGACCCTTACGATTAAGTTGGGGTATGAGAACGTATTATGGAGTAAGAATAAACAAGAAAAGTAGAATGCGATTTCATAGCCACGGGGCATTCAGACATCTATGAACACCAAAGAGAACAAAAACTGAATGTGGAGTTCCACTTTTGAGGGTATTTAGTAGTTTCAAAATCAGTCGAGCACAcaacacagaaatatataatatatatattatatatatacatattagtgttattattacTGACAGTTTAAGTGGCTAAAATCTCACACCCAGATTTACTTTCTTAATAACAAGTCACAAGTTTGATTACACAGATATGCCAAAAATTGATCATTTGATGGATTTGTACACATGCTTGTGAAGTGGTGGAAATCTTCAAATGGCACCAGAAATTTGACATTTAGTTCAAAGATACCTTAGAAAATACACTTCTAAGGATGTGCCTCATtttatacatacaatataatttaagaactaatctatttttaaatatgatgaCTGAAGGAAATTGATTTACGTGTGTTGCCCGAAATTTAGTGAACCTTAATGTTTACTTGACCAGAATGTTGAATCCTCAAGGTATTAtattgctttgctttttttgcaATTAGATTGTTGTTTctagtatttttcattttaatcgTGTTAtaaggtttttactttaatgttcTGGCTGCAATGAACcaataaagtaattaattaaatagtaAAACGTGTCAAAGCTCACACCATGTTATACagttctatttatttatgcaatgaACGCATTGCAAGATGtatcatatttacatattttcccAGTAGAGTGTAAAAGCATTggctaatttgtttttaatttttaattaattatatatatatatatatatataatttttattttacacaaattaaaatatgttagAG

Function

GO: NA

KEGG:

id description
K13761 PDE9; high affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026922296.2 False 3085 mRNA 0.41 20 14966583 14976662
XM_034300509.1 True 3135 mRNA 0.40 20 14966583 14976559
XM_034300510.1 False 3083 mRNA 0.41 20 14966582 14976662

Neighbor

gene id symbol gene type direction distance location
oafb LOC108260356 coding downstream 7029 14952423 ~ 14959553 (-)
pou2f3 pou2f3,LOC107691752,LOC107600771,LOC107712933,LOC107556425 coding downstream 18984 14938052 ~ 14947598 (-)
zgc:194948 NA coding downstream 34862 14929490 ~ 14931720 (-)
foxr1 foxr1 coding downstream 38723 14924340 ~ 14927859 (-)
derl2 derl2,LOC106567674 coding downstream 174723 14788860 ~ 14791859 (-)
slc37a2 slc37a2,LOC107691751 coding upstream 2010 14978672 ~ 14990778 (-)
ccdc15 ccdc15 coding upstream 15736 14992398 ~ 15001430 (-)
LOC113531526 hepacam,LOC108260456 coding upstream 25763 15002425 ~ 15011353 (-)
btg4 btg4,LOC107745130,LOC107556417 coding upstream 239421 15216083 ~ 15218113 (-)
ppp2r1ba ppp2r1b,LOC108260120,LOC108428700,LOC103032850 coding upstream 289438 15266100 ~ 15278746 (-)
G387277 NA non-coding downstream 89124 14870519 ~ 14877458 (-)
G387048 NA non-coding downstream 626386 14339316 ~ 14340196 (-)
G386873 NA non-coding downstream 1035884 13930487 ~ 13930698 (-)
G386868 NA non-coding downstream 1049781 13911262 ~ 13916801 (-)
G387434 NA non-coding upstream 221944 15198606 ~ 15204665 (-)
LOC117596201 NA non-coding upstream 244118 15220780 ~ 15234734 (-)
G387465 NA non-coding upstream 305186 15281848 ~ 15282052 (-)
G387467 NA non-coding upstream 305792 15282454 ~ 15282756 (-)
G387469 NA non-coding upstream 318785 15295447 ~ 15297906 (-)
ccdc84 ccdc84 other downstream 43192 14916662 ~ 14923390 (-)
selenow1 LOC103044489 other downstream 1286057 13616122 ~ 13680525 (-)
garnl3 garnl3,LOC107700942 other downstream 2075287 12807201 ~ 12891295 (-)
LOC113531030 NA other downstream 3268038 11691234 ~ 11698544 (-)
map1b map1b,LOC107597920 other downstream 3338896 11546309 ~ 11627686 (-)
nrgna NA other upstream 42231 15018893 ~ 15026869 (-)
gltpd2 LOC108260402 other upstream 905676 15882338 ~ 15888059 (-)
LOC113531235 NA other upstream 1386832 16363494 ~ 16380787 (-)
fxyd2 NA other upstream 1781578 16758240 ~ 16763476 (-)
crx crx other upstream 1989304 16965966 ~ 16970026 (-)

Expression


Co-expression Network