RNA id: XM_034300509.1


Basic Information

Item Value
RNA id XM_034300509.1
length 3135
RNA type mRNA
GC content 0.40
exon number 20
gene id LOC113531520
representative True

Chromosome Information

Item Value
chromosome id NC_047621.1
NCBI id CM018567.1
chromosome length 18889892
location 14966582 ~ 14976662 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGGCCCTTACACTAGCTTCTCCCTGTGTCTTGACAGGTCCTGAGGTTAGTAGATACAATAACAGTATTGTTTGCTTTCATTTCTCAACATTATTTTCaagtttctttttcattttgaagtCATTTTCCGACTTGTTTTCTGAGaAGCAAAGGTAGCAAtatcttaaaaaacaaaaccagaaaaatCTCAATAAAGGTCACAATGGGATCCAGCTCTTCGTCCTACGCTCCTAAAACCGTGTACCTGGACGTAGATGGCAAAGTTCAGAGGGTCATTTTCAGTCGACACTGCAGTCCGTGTGACATCAGGGAGTTGCTTTGTACGTCGTCCAACATAGCCAGAAACACGGCTATACTTTTAATAGATGCAGAAGGAGCACTGATGTCTATCGACCCCACCATGCCTACAAACTCACCTAACAACTTGTATAAAGTAGTACCCCATTCCAGTCAAGGAGGAGAGAAAGAAGACATGTTCCAGAACGTTCTCTCCCAAGTGGCAGAGCAATTCAGTCGGGCTTTCAGGATAAACGAGCTGAAGACGGAGATGACCAACAGACTGGCCATGCTGGAGAAGAGGGTCGAACTAGAAGGCCTCAAAGTGGTAGAGATTGAGAAGTGTAAGAACGATCTGAAGAAACTAAGGGATGAGGTGACCTCTAGAGGCGGAGCAAGGGTGAACTGCAATTGCAAATACAATTTCACAGATGATGGAAAGAAACTCTCTCCCAGACGTGATGTTCCAAGTTAtccaaagTACACACTTTCCCAGGAGACTATAGAGACTCTCAAGAAGCCCACCTTTGATGTATGGCACTGGGAGCATAATGAGATGTTAAGCTGTCTGGAGTACATGTATCATGATCTCGGACTAGTAAAGGAGTTTAACATGAACCCCATCACCCTTAAAAGGTGGCTGCTGGCAATCCAGGAAAATTACCGCGACAACCCGTTCCATAACTTCCGCCACTGCTTCTGTGTCAGCCAGATGATGTACGGAATGATCCACTTGTGCAACCTCCAGGAGAAGCTGACTATGACTGACATGTGCATTCTGATGACGGCAGCAGTGTGCCACGATCTTGACCATCCAGGATACAATAACACGTATCAGATTAATGCTCGGACAGAGCTGGCCGTGCGCTACAACGATATTTCCCCCCTGGAGAACCACCACTGTGCAGTGGCCTTCCAGATTCTCGCCATGCCGGAGTGCAACATCTTCGCCAACATTGAGCTTGAGTCCTTCAAACAGATAAGACAGGCCATCATTACTCTTATTCTAGCCACTGACATGGCCAGACATGGCGAGATACTAGATTCCTTCAGACAGAAAGTGGACAACTTTGACTTCACCAACGAGGAGCATGTCAAATGTCTTAAGATGGTCTTGATCAAGTGTTGCGACATCTCCAACGAGGTTAGACCAACCGAGGTAGCCGAGCCATGGGTGGACTGCCTGCTGGAGGAGTACTTCATGCAGAGTGACAGAGAAAAGTCAGAAGGTCTTCCTGTCGCTCCTTTTATGGACCGGGACAAAGTGACCAAGCCAACAGCACAAATTGGCTTCATCAAGTTTGTTCTCATCCCAATGTTTGAGACAGTCATGAAGCTTTTCCCTCAAATTGAGGAGATCATGGTGCAGCCGTTGCGAGACTCTCGTGACCACTACGAAGAACTAAAGCAGATTGATGATGCCATGTCCCAAGCccagaagaagaaaacagagagCATGTCATTAGGAGGAAAGAAGAAATAGACCCAACCTTCTGCTTCCTTGTTACAAAAAGAGAAGTTAGAAGCATAAACTGAAGTCTCATGGCAGGATGACGTAGCCTGGCTTTGTTCTGGTGTCCCATGTGCCCTTTTTCTGAGATGGAGTGGGCTTCTCCTGCCCCAGTCTCGCAAGCCTTGAACGCCCTCTCTGAGAGGACAGATTTCTCCACACCAGATAGATATAGTATTAGAGCAGATGTGAGAGGAACCTTAAGAGGGCGGTGAATCCTTTGCTTCACAAGTCAAGTGTTTCAAGATTCTACAGCACATTTTATACGGTAAGGTTGAGAGACCATAGCAGGAATGAAAATTCATTCACCTGTTTGAAGATGTGAAGTGTTAACAGCTGAAAAGGTGATTGTCTGGTGTTATGATAAAGGAAGAATTTTGAGTAGTTTAAAGGTATTAAGGGAAAACAATCAAAtggttttcatttctttatagATTTCTATATGTTTTTGACCCTTACGATTAAGTTGGGGTATGAGAACGTATTATGGAGTAAGAATAAACAAGAAAAGTAGAATGCGATTTCATAGCCACGGGGCATTCAGACATCTATGAACACCAAAGAGAACAAAAACTGAATGTGGAGTTCCACTTTTGAGGGTATTTAGTAGTTTCAAAATCAGTCGAGCACAcaacacagaaatatataatatatatattatatatatacatattagtgttattattacTGACAGTTTAAGTGGCTAAAATCTCACACCCAGATTTACTTTCTTAATAACAAGTCACAAGTTTGATTACACAGATATGCCAAAAATTGATCATTTGATGGATTTGTACACATGCTTGTGAAGTGGTGGAAATCTTCAAATGGCACCAGAAATTTGACATTTAGTTCAAAGATACCTTAGAAAATACACTTCTAAGGATGTGCCTCATtttatacatacaatataatttaagaactaatctatttttaaatatgatgaCTGAAGGAAATTGATTTACGTGTGTTGCCCGAAATTTAGTGAACCTTAATGTTTACTTGACCAGAATGTTGAATCCTCAAGGTATTAtattgctttgctttttttgcaATTAGATTGTTGTTTctagtatttttcattttaatcgTGTTAtaaggtttttactttaatgttcTGGCTGCAATGAACcaataaagtaattaattaaatagtaAAACGTGTCAAAGCTCACACCATGTTATACagttctatttatttatgcaatgaACGCATTGCAAGATGtatcatatttacatattttcccAGTAGAGTGTAAAAGCATTggctaatttgtttttaatttttaattaattatatatatatatatatatataatttttattttacacaaattaaaatatgttagA

Function

GO: NA

KEGG:

id description
K13761 PDE9; high affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU459030 lncRNA downstream 89125 14870519 ~ 14877458 (-) True G387277
TU458748 lncRNA downstream 626387 14339316 ~ 14340196 (-) True G387048
TU458569 lncRNA downstream 1035885 13930487 ~ 13930698 (-) True G386873
TU458563 lncRNA downstream 1049782 13911262 ~ 13916801 (-) True G386868
TU459094 lncRNA upstream 42458 15019017 ~ 15026847 (-) False nrgna
TU459229 lncRNA upstream 222047 15198606 ~ 15204665 (-) True G387434
TU459231 lncRNA upstream 222047 15198606 ~ 15204665 (-) False G387434
XR_004577373.1 lncRNA upstream 244221 15220780 ~ 15234734 (-) False LOC117596201
XR_004577374.1 lncRNA upstream 247298 15223857 ~ 15234734 (-) False LOC117596201
XM_026921617.2 mRNA downstream 7030 14952423 ~ 14959553 (-) True oafb
XM_026922325.2 mRNA downstream 18985 14938052 ~ 14947598 (-) True pou2f3
XM_026922326.2 mRNA downstream 19399 14938052 ~ 14947184 (-) False pou2f3
XM_026921640.2 mRNA downstream 34863 14929490 ~ 14931720 (-) False zgc:194948
XM_026922426.2 mRNA upstream 2113 14978672 ~ 14990778 (-) True slc37a2
XM_026921573.2 mRNA upstream 15839 14992398 ~ 15001430 (-) True ccdc15
XM_026922305.2 mRNA upstream 25866 15002425 ~ 15011353 (-) True LOC113531526
XM_026922391.2 mRNA upstream 42334 15018893 ~ 15026869 (-) True nrgna
XM_026921611.2 mRNA upstream 239524 15216083 ~ 15218113 (-) True btg4
TU459046 other downstream 43199 14916662 ~ 14923384 (-) True ccdc84
XR_003403286.1 other downstream 1051086 13915364 ~ 13915497 (-) True LOC113531684
XR_003403280.1 other downstream 1153254 13813233 ~ 13813329 (-) True LOC113531678
XR_003403212.2 other downstream 3268039 11691234 ~ 11698544 (-) False LOC113531030
XR_004577404.1 other downstream 3339061 11621662 ~ 11627522 (-) False map1b
XR_003403223.2 other upstream 1401026 16377585 ~ 16380787 (-) False LOC113531235
trnam-cau_50 other upstream 1454833 16431392 ~ 16431464 (-) True trnam-cau_50
trnam-cau_51 other upstream 1458639 16435198 ~ 16435270 (-) True trnam-cau_51
TU460427 other upstream 1989729 16966288 ~ 16970026 (-) False crx
LOC117596251 other upstream 2079024 17055583 ~ 17057882 (-) True LOC117596251

Expression Profile