oafb (LOC108260356)


Basic Information

Item Value
gene id oafb
gene name LOC108260356
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047621.1
NCBI id CM018567.1
chromosome length 18889892
location 14952423 ~ 14959553 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026921617.2
TACAACTCTACGACCAACAGAGTGAGGGGGGAAAAACTAATCGGCAACctagaaaaaaatcagtgtcGGCAGTGGAGAGCTAATTAAACCCTGAACTGTGGGGAAGAAGAAACTTTTTTTGTGGGAGGTTTTAAAGGATGAGAGATTTTGTGCAGCGGCACGCGCGTGTAAAtctctgtttacattttcactgaGATTGTTTCAGTTATTCAGGCGACATGATGAACCATTGTTGTGTTAAACGACCCCGGAGCGACTTTCctcagtgtttctgtttgtaCTAATGTACCCGAGTAGTATTTTCCCAGCCTCACTGCGGATCTGTGTGGTTATTTTCGCTCTCTTGCTgtcggtgagtgtgtgttcagagctGAAAGTGCGCGTGCGGTTAAATGATGGTCAGATAACTGCAGAGACTTTAGAGTCGGACAGCGAGCAGGACATCATCAGTGTAGAGTTCAGGCACACAGACGGCACTCTCATCACCTTCCTGGCAGATTTCAAGCGGCATGTGAAGATCCTGCGGGCGCTGGTGCTGGGGGAACCAGAGCGGGGCCAGACACAGTACCAGGGCCTCTGTTTCATCAGCAGGCTAGAACATGGAGAGATCATCCCAAGTGAGGCCATGGTCAGACTGAGACAGAAAAACCCTCATGTGGTGCGGACTGCCGAGGAGAAGCGTGGTCTAGAGCGGTTGAGCATGAACATGGCGGTGAATCTGACTCTATCCTGGCATCTCAGCTCCCACATCCGCAGCTTGTGCCGCGACGCTCAAGACTTCATCTACACACGGGAGCAGGACGTCAAATACTGGCTAGAAAAGGGTGTGGAAGGCTCCATATTCAAAGTGTTCCCCCAGAATGTCGAGACTACAGGCCTGCCGAGTTGCAGCGCTACTACGGATCCGTGGCAGCCGTGCTTGTGTAGCTACACCCTGAGGCTGGAATGGTACCCGTGCATGCTGAAATACTGCCGTGGCCACGGGTCGAGCCCGTACAAGTGCGGGATCAGGAGCTGCAGCAAGGCTTACCGCTTCGACTTCTACACGTCACGCAAGCAGCTGTGCATGTGGGACGAGGAGAGCTAACAGTGCCACTGTATACAGATTACTAATAACGTAACGAGTAGGAGTGTTATGCTAAAGGTTTGTGAAAAATTAAGCTGGGTAGCGATGAGGTGCCTTAAAATAGGtcttaatattaaaatgattctgaAGTGTTACTTTAACTTTTCTTCATTCAGGAGCACATGTATATTATCATCACAATATGTTTTTAGACTCCAGTATCTTCAGGTTTGCCTGAAAGGACAGATATTTTGACTTGAGCCATCAAGCCAGGTCATTATGTTTATTTCCGCTGTCACTACAGTGTAGCCTCAAGGCAGAAGGTCACATGACTGATAGGCTCATAGGTTAAATTCTCCCCTGGGAAAGAGGTGTTTGCTTGGATTCTGCGTGAATTCATTGTTGACATTGTAAACATCACATATTTTGTGTTAACGTTTATTAGTAACTTTCTATGTCTTTAATGGGAAGAACATGTATAGTGGAATTTATTAATCGTCCACggtagttatttttattttgtgtatattattAGTGTTAAACACTCATTGGCCACTGTATTAGGAACACATACATGTACACCTGCaaatttatgcaattatctaatcagccgcACAATAgataaaaaacatgcagatacaggtcaagagcctcagttattgttcatatcaaacatgaGAATGAGGGGAAATGAGATCTAAGTAAcactgactgtggcatggttacTGGTACCAAACGGCTTtttggagtatttcagaaactgcttatctcctgggattttcaagcacaacagccactagagtttatacagaatgctgcaaaaacatccagtgggTGGcaagaaatgccttgttgatgagagcggTCAGAAGTGAATGACCAGATGGGTTTGAGCTGACACAAAGGCTATAGTATCTCAAAGAACCACTCTTTACTCttaactgtggtgagcagaaaagcatctccaaacacacaccatgtcaaaccttgaggcagacaggctacaacagcagaagaccacatcgagttccactcctgtcagccaaga

Function

NR:

description
PREDICTED: out at first protein homolog

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026921617.2 True 2114 mRNA 0.46 4 14952423 14959553

Neighbor

gene id symbol gene type direction distance location
pou2f3 pou2f3,LOC107691752,LOC107600771,LOC107712933,LOC107556425 coding downstream 4825 14938052 ~ 14947598 (-)
zgc:194948 NA coding downstream 20703 14929490 ~ 14931720 (-)
foxr1 foxr1 coding downstream 24564 14924340 ~ 14927859 (-)
derl2 derl2,LOC106567674 coding downstream 160564 14788860 ~ 14791859 (-)
rabep1 rabep1,LOC107664300 coding downstream 174734 14757702 ~ 14777689 (-)
LOC113531520 LOC108259736,LOC108427349,LOC107664292,LOC107556423,LOC107600796,LOC107712935 coding upstream 7029 14966582 ~ 14976662 (-)
slc37a2 slc37a2,LOC107691751 coding upstream 19119 14978672 ~ 14990778 (-)
ccdc15 ccdc15 coding upstream 32845 14992398 ~ 15001430 (-)
LOC113531526 hepacam,LOC108260456 coding upstream 42872 15002425 ~ 15011353 (-)
btg4 btg4,LOC107745130,LOC107556417 coding upstream 256530 15216083 ~ 15218113 (-)
G387277 NA non-coding downstream 74965 14870519 ~ 14877458 (-)
G387048 NA non-coding downstream 612227 14339316 ~ 14340196 (-)
G386873 NA non-coding downstream 1021725 13930487 ~ 13930698 (-)
G386868 NA non-coding downstream 1035622 13911262 ~ 13916801 (-)
G387434 NA non-coding upstream 239053 15198606 ~ 15204665 (-)
LOC117596201 NA non-coding upstream 261227 15220780 ~ 15234734 (-)
G387465 NA non-coding upstream 322295 15281848 ~ 15282052 (-)
G387467 NA non-coding upstream 322901 15282454 ~ 15282756 (-)
G387469 NA non-coding upstream 335894 15295447 ~ 15297906 (-)
ccdc84 ccdc84 other downstream 29033 14916662 ~ 14923390 (-)
selenow1 LOC103044489 other downstream 1271898 13616122 ~ 13680525 (-)
garnl3 garnl3,LOC107700942 other downstream 2061128 12807201 ~ 12891295 (-)
LOC113531030 NA other downstream 3253879 11691234 ~ 11698544 (-)
map1b map1b,LOC107597920 other downstream 3324737 11546309 ~ 11627686 (-)
nrgna NA other upstream 59340 15018893 ~ 15026869 (-)
gltpd2 LOC108260402 other upstream 922785 15882338 ~ 15888059 (-)
LOC113531235 NA other upstream 1403941 16363494 ~ 16380787 (-)
fxyd2 NA other upstream 1798687 16758240 ~ 16763476 (-)
crx crx other upstream 2006413 16965966 ~ 16970026 (-)

Expression


Co-expression Network