ufc1 (ufc1,LOC107574697,LOC107691797,LOC107603203)


Basic Information

Item Value
gene id ufc1
gene name ufc1,LOC107574697,LOC107691797,LOC107603203
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047621.1
NCBI id CM018567.1
chromosome length 18889892
location 15311085 ~ 15313820 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026922286.2
TAGTTCCGTACTTCCGGTTTCCAGTACCTTACTAGCAACATGGCAGATGAAGCCACTAGGAAAATAGTTTCTCAAATACCACTTTTAAAAACCAATTCTGGGCCGAGAGACAAAGAGCTGTGGGTGCAGAGACTGCGAGAGGAATATTTGTCTCTCATTAAATATGTTGAAAACAACAAAGCAGCTGATAATGACTGGTTTCGTCTAGAATCCAATAAAGAGGGTACAAGGTGGTTTGGAAAATGCTGGTACATCCATGAACTTCTTAAGTATGAATTCGACATGGAATTTGATATTCCAGTCACGTATCCCGCTACGGCGCCTGAAGTGGCGATCCCTGAACTAGATGGGAAGACGGCGAAGATGTACAgggggGGTAAGATCTGCTTGACGGATCACTTCAAACCTCTGTGGGCGAGGAACGTGCCAAAATTCGGACTGGCTCATCTGATGGCGCTGGGACTCGGACCCTGGCTTGCCGTGGAGATCCCGGACCTCATTGCTAAGGGGATAATACAGCACAAAGAGCAGCAGGGCAGCTGAAAATTTGAAATGATGGAGAAATCAACTACCTGTCTTAACATCCTAACTGGCTAAATGATCAGCTTAGCaatgcaatacacacacacgctgtacaGTGTGACTGAAAATCCAcacatggatttaaaaaaaaaagctgttcatCCAAATTCAGGACCAGTCAATTCTGTGGACttcttgtaaatgtaaaatgtctaaTGTTTCCTTTGTGTCTTTAACCCTGTATTATTGACACCAGATTAAACCAAGATAATGGTGTTATAATTGTGTTGCTCATTA

Function

symbol description
ufc1 Predicted to enable UFM1 conjugating enzyme activity. Predicted to be involved in protein K69-linked ufmylation. Orthologous to human UFC1 (ubiquitin-fold modifier conjugating enzyme 1).

NR:

description
ubiquitin-fold modifier-conjugating enzyme 1

GO:

id name namespace
GO:0071569 protein ufmylation biological_process
GO:0071568 UFM1 transferase activity molecular_function

KEGG:

id description
K12165 UFC1; ufm1-conjugating enzyme 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026922286.2 True 819 mRNA 0.43 6 15311085 15313820

Neighbor

gene id symbol gene type direction distance location
fdxacb1 fdxacb1 coding downstream 5211 15299475 ~ 15305874 (-)
alg9 alg9,LOC107691744 coding downstream 19674 15282948 ~ 15291411 (-)
ppp2r1ba ppp2r1b,LOC108260120,LOC108428700,LOC103032850 coding downstream 32339 15266100 ~ 15278746 (-)
btg4 btg4,LOC107745130,LOC107556417 coding downstream 92972 15216083 ~ 15218113 (-)
LOC113531526 hepacam,LOC108260456 coding downstream 299732 15002425 ~ 15011353 (-)
bicdl2 LOC108259965,LOC108428730 coding upstream 17418 15331238 ~ 15339882 (-)
cryabb cryab,LOC108259721,LOC107574702,LOC107691740 coding upstream 32745 15346565 ~ 15349206 (-)
mks1 mks1,LOC107728202 coding upstream 82601 15396421 ~ 15405477 (-)
acaca acaca,LOC107691719,LOC107730320 coding upstream 173078 15486898 ~ 15527406 (-)
tbx2a LOC108260405 coding upstream 245499 15559319 ~ 15567411 (-)
G387469 NA non-coding downstream 13179 15295447 ~ 15297906 (-)
G387467 NA non-coding downstream 28329 15282454 ~ 15282756 (-)
G387465 NA non-coding downstream 29033 15281848 ~ 15282052 (-)
LOC117596201 NA non-coding downstream 76351 15220780 ~ 15234734 (-)
G387434 NA non-coding downstream 106420 15198606 ~ 15204665 (-)
G387491 NA non-coding upstream 36395 15350215 ~ 15357477 (-)
G387514 NA non-coding upstream 79055 15392875 ~ 15393084 (-)
G387529 mrm1 non-coding upstream 92108 15405928 ~ 15407338 (-)
G387573 lhx1,lhx1b,LOC107728209,LOC105023804,LOC105897175,LOC106581220,LOC107603180 non-coding upstream 147099 15460919 ~ 15463775 (-)
G387581 aatf non-coding upstream 161779 15475599 ~ 15476089 (-)
nrgna NA other downstream 284216 15018893 ~ 15026869 (-)
ccdc84 ccdc84 other downstream 387695 14916662 ~ 14923390 (-)
selenow1 LOC103044489 other downstream 1630560 13616122 ~ 13680525 (-)
garnl3 garnl3,LOC107700942 other downstream 2419790 12807201 ~ 12891295 (-)
LOC113531030 NA other downstream 3612541 11691234 ~ 11698544 (-)
gltpd2 LOC108260402 other upstream 568518 15882338 ~ 15888059 (-)
LOC113531235 NA other upstream 1049674 16363494 ~ 16380787 (-)
fxyd2 NA other upstream 1444420 16758240 ~ 16763476 (-)
crx crx other upstream 1652146 16965966 ~ 16970026 (-)
G388705 nono,LOC103047741,LOC107672625,LOC107741185,LOC107756548 other upstream 1976524 17290344 ~ 17328020 (-)

Expression


Co-expression Network