G387529 (mrm1)


Basic Information

Item Value
gene id G387529
gene name mrm1
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047621.1
NCBI id CM018567.1
chromosome length 18889892
location 15405928 ~ 15407338 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU459332
TTGCGAATGCTACTAGCTACTCTGTCCACTCCAAGAAAATATGCAGAGCGAAGGACAGAGCCGAGGTTCATCGGATCCTGCACTCCGTCCAGGACGAGCCACAGTGGACAGGGGTTTCCACTGCACCAATTTCCCTGCTGACTGTTGGATTTCTCCTTGGTGAGGAAACGTAATGGACTGGCTTGAAGGCACAGTCCCTGGTGGACCACATCACCGATCATCTTTTCCATTTCCCTCTTAGTAATGTGCTTAATGGGAATGCCTCGCCTGACTGCCTCCTCACAAACCTTCTCCACAGATTCCCTCTGACGTCCTTCCCTGCGCATCACGAAAAGCTGACTGAGCTTCCGTCTCCCCTGAGTCAAGGCTAGTAAACAAGGGACCACCCCGAAGACCAACTCATAAGGATTCTCTCTCTGGAGACGGGTGTTGGTGACCCTGTCCTTGACTGTCTTAGGAAGCTTCTGAGGTTCTGGTTCTGGCTTTCTGAGGTCCTCCAAGCTCAGCTTCTGGAGTTCAGAGGAGACTCTGCGGTCAGGGCCAGACCCCCTGTCAGGACCTGATGACTTTGCAGAAGGACGAATGATTCTGGAAAGATGACCTGAAGACTTGAAAGGGTTGCGTCTTACCCGTTGAGAAACTTTAAAACTAGTGTCTTTTGGGCAGAAGAAAATTTTGGAGCTGTGATACAGCGCATATTGTGTGCCGTCTGAGAAAGGGAATGTCAAAATCTCcaaatttgtgttatttttaataacacgTGAGAATCTACAGGCAGTTCTCCACATTTTTAGGCGAAACAAAATCACTGTGATGCAGCAATACTCCCAGATATAACAGTTTCTGATCCTTTATCTGGTCAATTTGGGAGGCAGATTATCCAAAAGCTGGAGAAAGCAGTCGAGTCAAGGCATTCCACACAACTCGAAAAACACAGATATGTTACATATCTACACAAATACCAATGTTCTACAAAAACACCAATGTTACTTCTACACAAGCTCCAGTGTTACATATCTACACAAACTCCAATGTTCTACAAAAACACCAATGTTACATCTACACAAGCTCCAGTGTTACATCTACACAAACTCCAATGTTCTACAAAAACACCAATGCACAAGCACCATCTGCACAAGTTTCAATGTCATATCTAAAAACTACAATGTGGCTATCATTTGTccttcagtatcagtatcattGCCGTTCAATTAAAAACGTCACATAATCAGATTACAGTCGAAATCGTATTATATACTTTAAAGAGACACGCAACAATGTTTAATGTCAGTTCCCTTGCAAATAACTCCCTTCTCATTCAGCGACAAATTACAGTACAGCCATGT

Function

symbol description
mrm1 Predicted to enable RNA binding activity and RNA methyltransferase activity. Predicted to act upstream of or within RNA processing. Predicted to be active in mitochondrion. Orthologous to human MRM1 (mitochondrial rRNA methyltransferase 1).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU459332 True 1346 lncRNA 0.44 2 15405928 15407338

Neighbor

gene id symbol gene type direction distance location
mks1 mks1,LOC107728202 coding downstream 451 15396421 ~ 15405477 (-)
cryabb cryab,LOC108259721,LOC107574702,LOC107691740 coding downstream 56722 15346565 ~ 15349206 (-)
bicdl2 LOC108259965,LOC108428730 coding downstream 66046 15331238 ~ 15339882 (-)
ufc1 ufc1,LOC107574697,LOC107691797,LOC107603203 coding downstream 92108 15311085 ~ 15313820 (-)
fdxacb1 fdxacb1 coding downstream 100054 15299475 ~ 15305874 (-)
acaca acaca,LOC107691719,LOC107730320 coding upstream 79560 15486898 ~ 15527406 (-)
tbx2a LOC108260405 coding upstream 151981 15559319 ~ 15567411 (-)
LOC113531228 NA coding upstream 279312 15686650 ~ 15692290 (-)
LOC113531182 NA coding upstream 288132 15695470 ~ 15704795 (-)
LOC113531247 NA coding upstream 318453 15725791 ~ 15743549 (-)
G387514 NA non-coding downstream 12844 15392875 ~ 15393084 (-)
G387491 NA non-coding downstream 48451 15350215 ~ 15357477 (-)
G387469 NA non-coding downstream 108022 15295447 ~ 15297906 (-)
G387467 NA non-coding downstream 123172 15282454 ~ 15282756 (-)
G387465 NA non-coding downstream 123876 15281848 ~ 15282052 (-)
G387573 lhx1,lhx1b,LOC107728209,LOC105023804,LOC105897175,LOC106581220,LOC107603180 non-coding upstream 53581 15460919 ~ 15463775 (-)
G387581 aatf non-coding upstream 68261 15475599 ~ 15476089 (-)
G387585 NA non-coding upstream 74005 15481343 ~ 15481777 (-)
G387601 NA non-coding upstream 163217 15570555 ~ 15570761 (-)
G387752 NA non-coding upstream 300082 15707420 ~ 15707623 (-)
nrgna NA other downstream 379059 15018893 ~ 15026869 (-)
ccdc84 ccdc84 other downstream 482538 14916662 ~ 14923390 (-)
selenow1 LOC103044489 other downstream 1725403 13616122 ~ 13680525 (-)
garnl3 garnl3,LOC107700942 other downstream 2514633 12807201 ~ 12891295 (-)
LOC113531030 NA other downstream 3707384 11691234 ~ 11698544 (-)
gltpd2 LOC108260402 other upstream 475000 15882338 ~ 15888059 (-)
LOC113531235 NA other upstream 956156 16363494 ~ 16380787 (-)
fxyd2 NA other upstream 1350902 16758240 ~ 16763476 (-)
crx crx other upstream 1558628 16965966 ~ 16970026 (-)
G388705 nono,LOC103047741,LOC107672625,LOC107741185,LOC107756548 other upstream 1883006 17290344 ~ 17328020 (-)

Expression


Co-expression Network