bicdl2 (LOC108259965,LOC108428730)


Basic Information

Item Value
gene id bicdl2
gene name LOC108259965,LOC108428730
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047621.1
NCBI id CM018567.1
chromosome length 18889892
location 15331238 ~ 15339882 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026921850.2
CAGTTTCATACCCTCCCACCTGATGAGAACATGGACAGAGGGTGGAGCTTGGGTGTTAACAGCAGAACTTTGACTCCAAGGAAACCACCAGTGCCTCCCTTGAGCTATACACGATAGCAGCAAACCAGGAACTTGCCAgGGTGTTGACCTGCCAAGTACCAAATCTACAATGAAGACCTCACTCTCCACTGAGAGCTGAAGATGACTTTTCACACTCTAACCAAACTTAAGAAGAAGCTGTCCAGCTTGAAACCCACAAAAAGCACCAATGATCTCAACACGAAAGGAAAGCTTAACTTCTCCCAGCCTGGAGGATTCATTCTTTCCCTTCTCCTCATCAACTCCTATTACCCGGCATCGCATCATGGGCCCAGGGGTCAGAGCAAACAACCTGCTGACATCCCACACAGACCATGACAGCAGCTCAACTATGCTGGAGAAGGATCTCATCCTGGCAGCTGAAGTGGGCCAGGCTCTTCTGGAGCGGAATGAGGACCTGGAAGCTCAGCTGGAACAGATGAAGAGAGACATGGAGGCTTTACAGCAGGAGAAGCACATGCTACAGAGACACCTGGAGGTAAGGGAGCTAGAGGCAGGGCAGAGGGAGGCAGAGCTACAGGCTGATATCACCTCACTACGACAACAGTTTGATCAGAAGCACAACCAGGGTCGAGACCGACGCCGTGAAGAAAGTGAGCAGCTTACACAACTGTCCAATCACAATCAGAAGTTGGTGGAGCAGTTGGCCGagGCAGTGTCGTTGGAGCACTCTCTGCGCCTTGAGCTGCGCTCTCTAAGAGAGGAAATGGAGGACACGAGTTTCAGCAGATCAATAAGCTCTGCTCGCCTGGACACCCTGCAAGCAGAGAATCAAGTTCTAAAAGAGCGTTGCTCCAACATGGAGAAGCAGCTGAAGTCATCAGATGAGGACAACGAGAGGATGAGGATGGAGAGGGACGGACTTCGTGCAAGACTCCTCGAACTCCAGACCAACCTGAAAGAAAAGGAGGGTGAGCTGGAGCAGCACCAGAGTGAGGCGTTCCAGTTGCGCACCATGAATCGGAGCCTCCAGCAGAAAGTCCAGGCATTAGGAGAAGACGCCAGTCTCGAGGAGATCACATGCTTCCCCATGTCCCTCCAGAATGAACTGCAACAGTCTCAGGCCAAAGAAAGCATCTTGGCCCATTCTGCTGTCCTGCAGGGGAAAGAGGAGGAGATTGAAAGACTAAAGAAGGAGCTTGAATCCAGCCAGGATGAattagcagcactaagagaGGAACTGAAGCTGTTCCGCAGTGATCCCAGCAAACCACCCTACAGTGCTTTGGAGAAAGAGCTTGCATTGGCCCGGCAGGAACGTGACACACTCAACCAGCAGCTCCTGAACACCATCAGACACAAGGTGGCTCTCTCTCAGGAAGTTGAATCATGGCAGGAGGACATGCGTCTGGTGATATCCCAGCAGGTGCAGCAACAGGTACAAGAaagggagaaggagaaggagaaacagAAGATGGCATCGTCTCTGCAAAGAAACAGTCGCACAAGCAGGTCTTTCCGTTTACCAAGAGAGGAGGGGAAGAAGagcttcttctcttctctgtttggtggggaataaaaaaaaagttgactgACGACAAAAAACAGGATGAGGAAAAGTGAAACAGGACGAAGCACATACTGAAAGGAAGAGTTAGAGGACACAAAACTACTGAAGGGAAGAGTTAGAGGACACGAAACTACTGAAAGGACAAAAAGCAACTTTCATGGGTAAATATTCTGTCCAGGACTGTAAGTAATAGGAAGCAGACAAAACATGGCATAATGGCATggcatttatgtatatttattttgtctatatTCATTCTTGTTGTACAAAATATGACACAAATgtttattatgaaaataatgttgataaatgcctttatatatttaa

Function

NR:

description
PREDICTED: bicaudal D-related protein 2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026921850.2 True 1936 mRNA 0.48 11 15331238 15339882

Neighbor

gene id symbol gene type direction distance location
ufc1 ufc1,LOC107574697,LOC107691797,LOC107603203 coding downstream 17418 15311085 ~ 15313820 (-)
fdxacb1 fdxacb1 coding downstream 25364 15299475 ~ 15305874 (-)
alg9 alg9,LOC107691744 coding downstream 39827 15282948 ~ 15291411 (-)
ppp2r1ba ppp2r1b,LOC108260120,LOC108428700,LOC103032850 coding downstream 52492 15266100 ~ 15278746 (-)
btg4 btg4,LOC107745130,LOC107556417 coding downstream 113125 15216083 ~ 15218113 (-)
cryabb cryab,LOC108259721,LOC107574702,LOC107691740 coding upstream 6683 15346565 ~ 15349206 (-)
mks1 mks1,LOC107728202 coding upstream 56539 15396421 ~ 15405477 (-)
acaca acaca,LOC107691719,LOC107730320 coding upstream 147016 15486898 ~ 15527406 (-)
tbx2a LOC108260405 coding upstream 219437 15559319 ~ 15567411 (-)
LOC113531228 NA coding upstream 346768 15686650 ~ 15692290 (-)
G387469 NA non-coding downstream 33332 15295447 ~ 15297906 (-)
G387467 NA non-coding downstream 48482 15282454 ~ 15282756 (-)
G387465 NA non-coding downstream 49186 15281848 ~ 15282052 (-)
LOC117596201 NA non-coding downstream 96504 15220780 ~ 15234734 (-)
G387434 NA non-coding downstream 126573 15198606 ~ 15204665 (-)
G387491 NA non-coding upstream 10333 15350215 ~ 15357477 (-)
G387514 NA non-coding upstream 52993 15392875 ~ 15393084 (-)
G387529 mrm1 non-coding upstream 66046 15405928 ~ 15407338 (-)
G387573 lhx1,lhx1b,LOC107728209,LOC105023804,LOC105897175,LOC106581220,LOC107603180 non-coding upstream 121037 15460919 ~ 15463775 (-)
G387581 aatf non-coding upstream 135717 15475599 ~ 15476089 (-)
nrgna NA other downstream 304369 15018893 ~ 15026869 (-)
ccdc84 ccdc84 other downstream 407848 14916662 ~ 14923390 (-)
selenow1 LOC103044489 other downstream 1650713 13616122 ~ 13680525 (-)
garnl3 garnl3,LOC107700942 other downstream 2439943 12807201 ~ 12891295 (-)
LOC113531030 NA other downstream 3632694 11691234 ~ 11698544 (-)
gltpd2 LOC108260402 other upstream 542456 15882338 ~ 15888059 (-)
LOC113531235 NA other upstream 1023612 16363494 ~ 16380787 (-)
fxyd2 NA other upstream 1418358 16758240 ~ 16763476 (-)
crx crx other upstream 1626084 16965966 ~ 16970026 (-)
G388705 nono,LOC103047741,LOC107672625,LOC107741185,LOC107756548 other upstream 1950462 17290344 ~ 17328020 (-)

Expression


Co-expression Network