RNA id: TU459678


Basic Information

Item Value
RNA id TU459678
length 3642
lncRNA type inter_gene
GC content 0.37
exon number 2
gene id G387809
representative True

Chromosome Information

Item Value
chromosome id NC_047621.1
NCBI id CM018567.1
chromosome length 18889892
location 15877892 ~ 15940702 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTTATGAAGTTTATTtcacaacaacaaacacaggCAGGAGTGTTTAATGcattaaatctgtttaatgtAGTGGATCATAGTGTAACAGTAAAATCTGACCTgtgagagcactgtgtgtgtgtgtgtgtgtgtgtatgtgtgtgtgtttgtgtgtgtttgtcaccTGCTCATGATAGGTCTATTTTAGACTCCCAAATACCATTAATGCgccctaatctctctctctctctctctctctctctctgtgctatTGTCATTcatatagagagaaaaagagaggagagagatttAGCAAGAGACAGAGGTTACAGTAATGATTTGTGAAAGTCAGACTGGATTGAGATTAAATACGCTAATTTAAATGACTGACATTCTAAGATTCTCAGCaagaaatgtctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttggaggttGCTAAATAAACCCTGTATCCGTCTATGAACTCACTTTTTCACCCTGAGCTGTATAGCTAAACGTGCTGTATTAGTTTGTGTATACTATATATGACAAAATACAGAGCACATAGGAGCATTCAATTTTCCATGTAGCTCTTaagtttgcattttatttggttaataatttcaagcttaaaacatttttttttacattccatAGCATTACATTCTTCTTTTCAAATGAGAAAGCAACAAGagtaaaaatacacactctgtttttttaagtttcgaagaaaaaaaaaattgccacaCAATCAAACCATGTATTATATATCTGACTTTCAGATGTACATAGAataatatatctatctatctatttatctatctatctatctataatgcCTAGAATATACTACATTTCATATTGCTACACTCTGACCAACTCAAAAAGGCAATCTGAAAGATAATATGCCGCGTAATATTGCTTTTTCAACGCATCACCTTTGTCATGGTTATTTGTTTTGTTAGCTGTGAAATGGCAATTAAAACTGTCAGTACAGTTTCTTCAGTGATCCAAGGGGAAAAGATCAGTTTGTCACttcaggaagaaaaaatgatgcagtTGACAAAATCCGATTTTTCTACCAGGAGgtagtgtttttaaaaatctgattttatattttaaacattgtggctatgtgtgttatgtttcaAACTCAAAAAGGTCATACCTATGTCTGAATTTGTTATGTAGCTGTCACTTTTTTCATAATATGCCAACAAGAATGGCTGTGACAGACACAGTTAATGATATGTAATACGAAACCTGTGgctcatgaatatttatgatttgGACCCCTGTGGTCTGAAAGATCAGCTATCCACTGCATTATCAAATatgcagcagagagaaagagagagagagagagagagagagagagagagaccacagGAGTcgcctccatcacacacacacacacacacacacacaattacagcaGTAAGGAATGGCGGGGTgggaacaaaaagaaaaataaaggtaAACAAAAAAAGGTGCTAAGCAgcactttgaaaacacacacatacacacacacacacagacaatgaAAACAATGAAGTTAGTATGTTCCAGAGTAAGAGAGATCAAGAAGTttacaaagaaagaatgaaagaaaacagagatcaagaaatgaacaaagaaagaatccagaaaaggaaagaaagaaagcaagcaaattaaagaaaagaaaagaaatgaaaagacgagaaaaggagaaaagatcATTTgatatgaagaaaaagaaaaaaaaaggaaaaggggatgggatgggatggagTGATGACATGCTCTCCCTGTCCTGGATTATCCAATCAGATTAACAGATTAGGCAGGTAGAGGGAGAGCACACATATCTGCTCTGCTGGAGgacacactgtgtgtgcatgtgtgtgtgtgtgtgtgcccctTAATCAAAGAGCAAAAAGGAAGTGAGACAAAATAGATGGATTTGTCTCATCCCAGGTGAGCATACTGAGAAAAAAAGTTGAGTGAAAAAAGATGAGTgcagctgtttttgttttatgtgtgGAATGATTtcttatttatgaaaaaaaaaacctaagacACTCCACTTTTCGTACTTTTCTACCATCTCTATCACTCGACTATTAACAGAGAGTGAATGCTCTCAAAAATATATAAGACATAGAACAGAATGAGGATAAAGGaaagaaatgcacacacacacacacacacacccttagtGGCATATATAACCATATATGCACGTGTGCACGCTCCATCATAAGCACACAAatcttcattttcactcatcAATCAAACTAGACCAagtgcaaatcaatacaaacaacagcatcctttttttaaaatctacatgaaatacattattatacatgcaaaactataatatattacttatttatacatttagatatatataaataagcaTAAAAAGATACACCTCATGTAAATAAGGTGTGCTGGATGGAGAACGTGTGCGTGACGTCAGCAGTGATGGTAAAATGAGAGCAAATTTTTAGAAAGAGTGCCGTGTTTTCTGGATTCTAGCGCTTTTTCGCCCTTTTAGACACAGTAGTAACATACACGTTATCATTTTTCATCTAATGTTGTCATCtggttatatttatatttataacatgtAAAAATACAACCATTAAAAGCAGCCTATACATGAACGATACAATGACTCGTGCCAATATTTTCTGATATATGGGGACACTTCGGTGGGCGGTCTCTTGTACCTGTTGGCCAATCAGAGACGAGTATTTTCCACAGCTGGTGTAAATGAAGTCAAATCGGGTGGAAAATGTAGCTAGCGTACAGCTGTATGGGTGAAATGTTCTCTATATACGTCagccatttttatatatatatataaaaacgcCCAGTTACTTATATTACGAAGCGTCATGTTTATTGATATCTGAGGAATTTCAGGGTGGAAGTAGACATCGTATACTCTGGTACACGTTGTACTTTAGAAAATATACGTATCATTAGTGTGTAAGCGTAGGAGagtattcacacacatacacactcacatgcagaAAAAAGGTGTTAACAAGAAAACTACACTCATATTTTTTAACACCCTCTCGCTCTTGATTCGTATTGTACAATTTTAATGTCGGTGTTTTGCCCCATTTTGAGTCATGTGATCTGATCAATCACACCCTTGCCATCTCTCCATCAAATCCTCACTGCTTTCGATCATAAATGTCTCTTTTACATTATAGTCATGCAGTATAAATAGATTTCTCAGATAAAATTGGTAATACTTGTAAACActcagtgtatatacacacacacacacacacaaagacacacacaaattcgGCTTATTTTTGATGACTTCAGTAACACGTTTGATCATTTGAGACTGTTGTGTCTGGTGTGTTTTTCTCGGAGCATCCTGTATACGATATGATAGAGTGCATGGGGGATGTGTGTATAAAGCagatgtatatgtgtatacacaAGAGCGTATAAAGACGGCACCGACTTCCTTCAAATTATTTTCTGGAGTTGATCCTCAGCTTGAACGAGACGCGGCCGGCAAACTTATCGCGGTCATTGTTAGTGTGGATGTTGTTGGCGATGATCTTGCACTCCACGTTCACTTCGGCGTTCAGCGTGATGTTCAGGAACTTGACGGCCACCAGAGGCTGAGAGTAGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU459674 lncRNA downstream 14345 15862239 ~ 15863547 (-) True G387806
TU459607 lncRNA downstream 170269 15707420 ~ 15707623 (-) True G387752
TU459419 lncRNA downstream 307131 15570555 ~ 15570761 (-) True G387601
TU459403 lncRNA downstream 396115 15481343 ~ 15481777 (-) True G387585
TU459399 lncRNA downstream 401803 15475599 ~ 15476089 (-) True G387581
TU459690 lncRNA upstream 775 15882338 ~ 15884210 (-) False gltpd2
TU459679 lncRNA upstream 32652 15914215 ~ 15940702 (-) False G387809
TU459734 lncRNA upstream 123900 16005463 ~ 16007070 (-) True G387861
XR_004577450.1 lncRNA upstream 162334 16043897 ~ 16048171 (-) False LOC117596269
XR_004577451.1 lncRNA upstream 164737 16046300 ~ 16048171 (-) True LOC117596269
XM_026921771.2 mRNA downstream 64362 15803020 ~ 15813530 (-) True mogat3b
XM_034300707.1 mRNA downstream 70128 15803020 ~ 15807764 (-) False mogat3b
XM_034300706.1 mRNA downstream 70128 15803020 ~ 15807764 (-) False mogat3b
XM_034300705.1 mRNA downstream 70519 15803020 ~ 15807373 (-) False mogat3b
XM_034300697.1 mRNA downstream 80614 15779012 ~ 15797278 (-) False LOC113531471
XM_026921784.2 mRNA upstream 1158 15882721 ~ 15888059 (-) True gltpd2
XM_034300575.1 mRNA upstream 33538 15915101 ~ 15917939 (-) True LOC117596229
XM_026921773.2 mRNA upstream 105614 15987177 ~ 15999635 (-) False gnb2
XM_026921772.2 mRNA upstream 105614 15987177 ~ 15999635 (-) True gnb2
XM_026921775.2 mRNA upstream 105614 15987177 ~ 15996756 (-) False gnb2
TU459046 other downstream 954508 14916662 ~ 14923384 (-) True ccdc84
XR_003403286.1 other downstream 1962395 13915364 ~ 13915497 (-) True LOC113531684
XR_003403280.1 other downstream 2064563 13813233 ~ 13813329 (-) True LOC113531678
XR_003403212.2 other downstream 4179348 11691234 ~ 11698544 (-) False LOC113531030
XR_004577404.1 other downstream 4250370 11621662 ~ 11627522 (-) False map1b
XR_003403223.2 other upstream 496022 16377585 ~ 16380787 (-) False LOC113531235
trnam-cau_50 other upstream 549829 16431392 ~ 16431464 (-) True trnam-cau_50
trnam-cau_51 other upstream 553635 16435198 ~ 16435270 (-) True trnam-cau_51
TU460427 other upstream 1084725 16966288 ~ 16970026 (-) False crx
LOC117596251 other upstream 1174020 17055583 ~ 17057882 (-) True LOC117596251

Expression Profile