RNA id: XM_034300575.1


Basic Information

Item Value
RNA id XM_034300575.1
length 2358
RNA type mRNA
GC content 0.41
exon number 2
gene id LOC117596229
representative True

Chromosome Information

Item Value
chromosome id NC_047621.1
NCBI id CM018567.1
chromosome length 18889892
location 15915101 ~ 15917939 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TCAGAGTCAGAATGCATCCCGCTGTCTCTGGCAAATTTCAGTAATATGCAGCACAGCCTTCGAATATTCCTCCACCCTCAAAACTCAAACAAAATTTACTCGACCTATAATACAGTTGTTTATGCTTAAGGAGGAGTCAGACTTCCGCCTCATACTAAAAAGAAAAGTCCTGCTCCATCAGCTATCTTTCAATCCAGTGGAGAGTCTCTTAACTCGAGCTTAACTTAGAAAGACACATCAGGAAGGAAAACTTGATAAATTGGTCTGAAAGAACTCCAACATGCTTGAACAAGTGATGCCATATAAGCCAAAAAACCTGGCAGAAGACATGATCTTATGTGCTGAATTAAGAGAAAAGGGAAGCAAGGTTACAGCCAAGCGTTTAACTAAAGAAAAGAAGGGCACATATCCCCAAACAGGAACCCCTGCTGACTGCAGCACTTGGTGGATGCAGTTCAAAGAGGGTAAAAAGAAGGACAAAATGGCGATGGTAGTCATGGCTTCTCACTATAACCACGTTGTCAAGCTACTGGACATGTGGCAAAGTGAAGTGTTACAGCTCAAGGCTAAAACAAAGTCTCAAGAAGAAGAGATCAAATTACTGAAGCTGAAACTCCAGCAACGGGACGAAGAAAACACGCGACTAAATTATGAGCTGTCTAACAACTCTAAGAAAGTGTTACAACTCGAGTATAAAACAACGTCTCACAAGGAAGAGATTAAATTGCTGACGGTGAAACTCCTGCAGTGGGAAGCAGAAAATGGGCAACTAAACTACGTGATGTCTAAAAATTCTAGCAAAGTGTTACAGCTCAAGTCTAACGCAGACTCTCTAAAGGAAGAGATCACCTCACTAAAGCTGAGAATCCAGGAACAGAACGCAGAAAATGAGCAACTGAAAAACAAGATTGCTAATTACATTCCTTCCACTGATGGCTCCAGCACTTGTGACTTGCAGTGCAACCTGGCAGAGATCACTTCCTGCTCTCCTTAAAGAACTTCCAGACTTGCAGTATGACAACTCCAACTACGAGTTCTGGGCCAAGATAAAGAGCTGGCTCCTCAAAGGAGAAGTGGATCCTAAATGTGTCTTTAAActtgtaaaaacaaaatgccCTCTAAAAGCTTGGCAGGCAATAGAAGAGAACTTCGACAACAAAGACCTGACTGAGATGGCCTTTTCGAACCCTGCAACGATGAGCAGACTGTTGGAGAAGCTCTGGAAGTGTGTATCAGAAGCTCTAGGGCCAGGTACCAAACTGTTTGAGCTGTACTACTACCGGAGGCAAGAGGTTGGTGAAACATTCGAAGAGTATTTTCAAGAGAAGTTCAGGCTGTATTGCTCCTACGGGGTGGACAACACAGAGCCGAACAAGAACGACCGACATTTTCTCTGTAACGTCATGGAGAAAGCGGCAAAGAGCTATCAGGCCATAGAGTCGCAGTGCCCCAAAAGCTACACTGATTTGCTGACCAAGGCCATGTTTATTGACAGGATGCTAACGACAGCTGAATTTAACAATGAGTGCTTGAACTGCTGCAGGAAAGGCCACACTAAAGCTCAGTGCAGAAGACCGGGAGGGGACGCAGAGGTCGGGCCTAACCAGTGCTTTACATGTGGGAGGTACGGTCACTGGGCCAGGAACTGCTGGACTTAGTATCAGCAAGTGATCAGGAATGTTGGAAAGGTTAAAAACCAGATCACAAGCATGTCAGCTAGTGTATGTTCCATGTTAAACTACCATTCCTGCAATTTTCTATCCCTTGTTCACTTGAAAATCCACTTAAAAGTTGAGTTTCTGTCACCCTCCATAGCTGTCATATGCCATATACTGTACTCTTGTATAAAGCAACGTTAATATCACCTACATATAACGTTACAtttttctgctttgctttgttaGACAAACTGGTAGGGTTATAAACTGTaattcatagaaaaaaaaatcaagcattaGGTAACTGACATGCTGTCCACTCTACTTGCCAATGCAACTTAATTATAGACAGTTTCTTGTCTTTCTTTAGTTTCTGAACtggttatttaattttattttaggaTTATTAAGCCTTTGTATTGTCAGATTTTGGTTTTAGGGTGGAAGCACACTATGACTGCTTTACCAAATGAACAGTTAGTAATTtgtcacacatttttaatggttttaatggtacaCTGAAATCTGTATCTGCTCTTGATATGCTGATTACATCTTTTGtccttttatataaacattactTACATTGCAAATTATCCCTAACTACAAAACTACAGGCTATGgagtaatttttttatgttgatcTTTGTGTCTCTTGTATATTTAGTGCATTGCAAATAAAGACTCTGATTCGAGCTca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU459690 lncRNA downstream 30891 15882338 ~ 15884210 (-) False gltpd2
TU459678 lncRNA downstream 33538 15877892 ~ 15881563 (-) True G387809
TU459674 lncRNA downstream 51554 15862239 ~ 15863547 (-) True G387806
TU459607 lncRNA downstream 207478 15707420 ~ 15707623 (-) True G387752
TU459419 lncRNA downstream 344340 15570555 ~ 15570761 (-) True G387601
TU459734 lncRNA upstream 87524 16005463 ~ 16007070 (-) True G387861
XR_004577450.1 lncRNA upstream 125958 16043897 ~ 16048171 (-) False LOC117596269
XR_004577451.1 lncRNA upstream 128361 16046300 ~ 16048171 (-) True LOC117596269
TU459776 lncRNA upstream 159247 16077186 ~ 16078011 (-) True G387897
TU459779 lncRNA upstream 162276 16080215 ~ 16082763 (-) True G387900
XM_026921784.2 mRNA downstream 27042 15882721 ~ 15888059 (-) True gltpd2
XM_026921771.2 mRNA downstream 101571 15803020 ~ 15813530 (-) True mogat3b
XM_034300707.1 mRNA downstream 107337 15803020 ~ 15807764 (-) False mogat3b
XM_034300706.1 mRNA downstream 107337 15803020 ~ 15807764 (-) False mogat3b
XM_034300705.1 mRNA downstream 107728 15803020 ~ 15807373 (-) False mogat3b
XM_026921773.2 mRNA upstream 69238 15987177 ~ 15999635 (-) False gnb2
XM_026921772.2 mRNA upstream 69238 15987177 ~ 15999635 (-) True gnb2
XM_026921775.2 mRNA upstream 69238 15987177 ~ 15996756 (-) False gnb2
XM_026921778.2 mRNA upstream 103574 16021513 ~ 16032515 (-) True hsd20b2
XM_026921755.2 mRNA upstream 151266 16069205 ~ 16075292 (-) True si:ch211-284e13.5
TU459046 other downstream 991717 14916662 ~ 14923384 (-) True ccdc84
XR_003403286.1 other downstream 1999604 13915364 ~ 13915497 (-) True LOC113531684
XR_003403280.1 other downstream 2101772 13813233 ~ 13813329 (-) True LOC113531678
XR_003403212.2 other downstream 4216557 11691234 ~ 11698544 (-) False LOC113531030
XR_004577404.1 other downstream 4287579 11621662 ~ 11627522 (-) False map1b
XR_003403223.2 other upstream 459646 16377585 ~ 16380787 (-) False LOC113531235
trnam-cau_50 other upstream 513453 16431392 ~ 16431464 (-) True trnam-cau_50
trnam-cau_51 other upstream 517259 16435198 ~ 16435270 (-) True trnam-cau_51
TU460427 other upstream 1048349 16966288 ~ 16970026 (-) False crx
LOC117596251 other upstream 1137644 17055583 ~ 17057882 (-) True LOC117596251

Expression Profile