RNA id: XM_034300750.1


Basic Information

Item Value
RNA id XM_034300750.1
length 2313
RNA type mRNA
GC content 0.48
exon number 15
gene id rnf214
representative True

Chromosome Information

Item Value
chromosome id NC_047621.1
NCBI id CM018567.1
chromosome length 18889892
location 16832882 ~ 16839380 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TAGCTAACCTCGCTTTCTGATTGGATGTTTCACTCTCGAAGCGAGAATTTCAGTTTCTGACCTGACATCTGAAATAATTATAGGTAAATTCTGACTAGACAGGAACAACAGGCAATTTAACAAGTAATAATCCGTGAAACAACTATTAGTGTCGTGTTATTTTTCTTGTAATGCCATTCGACATATTTGAATCTCGCGAGATTTGACTCTACAAGGAACTCGCTCCACAAGACAGGGAGAGAATAATTGTTGTACCATTTTGGGAGGTGGTGGATGGTTTTTGGTTCAGTCCATATCCGTCGGAAGGTGGAGTGGACATACCGGAAGTGGAGCTGGATAACTCTGGGGTACTGAATACAATGCCAATCAATGGAGAGACCAGAGAGCAGGATGTTCAGACTGATGACTGGACGCAAGAAAAAAGTGTCAACACAAATGAAAGCTGGGAACACTTAATGagcGTCCTGGTGGAACAGAGTGCCGAGCTGGCGGAGGAGTGCGAGTCTCTGGAGAAACAGCAGGCTACTGAAGAGAGCGAGTGCAAGAGCCAAATCGAACGTTTGGAGAAGATGAGAGACGACAAGCAGCGGCAACATCGGGCTCTCCTAGATAAGATCGAGTCAGTGCAGGTGAAACTGGATCTAAACAGCAGCAAGACCACGCGGAAAAACTTCACCGCCAAAGTCGAGGAGCTCACCGCCGAGAGGGATCAAAAGCTGGAGGTGAAGAGAAGattgaCCCAAGAGTTGGAGGACATTGATGGGAGACTGAAGTTGCATAAGGAagagcaaagaaatgaaaaGCTTTCTTGGGAACAGGAGATTGCTGCTTTGCAGCATGAGATGGAGAGACTCTCTAGACAAGTTGAAGAATCCAATCAGGCAGCTCTGAAGGATGAGatcgcTGCTCTAGAGTCTCAGAAAGAGCTGGCAATTTCTCAGCTAGAAGACTGGATTGCAGAAGCTGAAAGATATCTAAACACTGTCAGGTCAGACACTTCACCTCAGAGCAGCCGGCATCGACTTGAATGGGAGAAAAATGTGGTGATGGTTCGTAACAGCTTGGGAAAACTACAGTCATTATATAATGAAAACCTTAAGCAGCTTCACAAAGGGCAGCAGCTGGACAGTTTGCCTAAAATCCCCCTGCCTCATCTCCCTCACATACCCATGatcGATTTGCTGAATTTCACATCGTATGCTGCGATCCGCCCCCCAGTGACCCAGCCTCAGTTTCACTCAGCCCAGAGATCCACCCCCCCTCCGCGTTCTGCACAAAACCCAGTGGCCTTCACGCCACACACGCTCGAACAGAACGTGGCCGTACCGAGGCTGGCCACGCCCACCGCCATCCGTGCCCCCACAATGCCCTACACTCATCCAACATACACATTACCGTACTCTGTCCCTACAGCCCAGGTGAGCGTCCCGGTTAGTCTCGCAGCAGCAATGGGAGCGTCACAAGGGGCAGGGCCAGTGGCCGCAGTACGAAACCCCGCCTCCCAGGTGCTTCCGTCAAACCCACAACCTGCAGGCAAGCTGGATAAGCTGCTGGAGATACTGGGCACGCAGTTCCCACAATGCACGAGAACTCAAATAATGGCTGTGCTGCAGCAGGTTAAGAGTGAGCGTGGCACTATGGCTGGCATGTCTGTAGAGGACATCAAACAGCAAGTGGAACAGAGACTCGCACAAAATGAACGCCCGCCTCCAGGCCCCATAGCGCCCCCTGCAGGCTCCAGACACTCACACAGAGGTCCTGTCCAGCCCGCGCTGTCCCCCCGTCCCTCTCTCCATGCTCCCAGCGCTCACGTCTTCCAGTCCCGAGTCCCACAGGCAGCTCCATCTGTGCGTaagctgtgtttaatgtgtcaGAACCATGTAGAACCCGGAACCCAATACCAAACAAACTGCCCTCATACGCTACACAAAGAGtgCATCAGTGTGTGGCTGCAGTCCAGCAAGAACAACTCCTGTCCCTTCTGTCCCAGCAAATAAACCCATGAGGCTCTTTCTTTCACGTCACATGACCATGTGTCGTTGCTGATTTAACACATCGTGCGCACAAGATCAGGTGATTTACAGATACAGTTCATCATCGACACTGAGACctgctgggattttttttttttcctttcgtTCCTTTTGTTATATTCTTTGATTTGTgattaatatttttagaaatatttttttacatgaatcCAAACAGGGGGAAAATATGTTATATGTTTATCTCTCTTCCTACAGAGAGATAAACATTGTAGAGCTCTCTGTAAttaaattatgtatattttctaataaatgataattaatA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU460375 lncRNA downstream 69406 16758240 ~ 16763476 (-) True fxyd2
TU460340 lncRNA downstream 134103 16646975 ~ 16698779 (-) True G388359
XR_004577437.1 lncRNA downstream 143837 16687035 ~ 16689045 (-) True LOC117596255
TU460049 lncRNA downstream 397503 16429227 ~ 16435379 (-) True G388134
TU459998 lncRNA downstream 495758 16334604 ~ 16337124 (-) True G388091
TU460385 lncRNA upstream 4617 16843993 ~ 16850404 (-) True G388400
TU460396 lncRNA upstream 106537 16945913 ~ 16951051 (-) True G388406
TU460395 lncRNA upstream 109599 16948975 ~ 16950536 (-) True G388405
TU460436 lncRNA upstream 139073 16978449 ~ 16989015 (-) False G388440
TU460437 lncRNA upstream 139073 16978449 ~ 16989015 (-) False G388440
XM_026921787.2 mRNA downstream 14637 16808492 ~ 16818245 (-) True mpzl2b
XM_026921797.2 mRNA downstream 29489 16789154 ~ 16803393 (-) True scn4bb
XM_026921752.2 mRNA downstream 52827 16769766 ~ 16780055 (-) True tmprss13b
XM_026921822.2 mRNA downstream 69409 16758244 ~ 16763473 (-) False fxyd2
XM_026921699.2 mRNA downstream 76746 16744036 ~ 16756136 (-) True arhgap35b
XM_026921808.2 mRNA upstream 14088 16853464 ~ 16861200 (-) True tagln2
XM_026921809.2 mRNA upstream 28077 16867453 ~ 16872014 (-) True tppp2
XM_034300657.1 mRNA upstream 43772 16883148 ~ 16890513 (-) True nfkbib
XM_026921782.2 mRNA upstream 69185 16908561 ~ 16927179 (-) True gjd1a
XM_026921817.2 mRNA upstream 112005 16951381 ~ 16955173 (-) True LOC113531238
trnam-cau_51 other downstream 397612 16435198 ~ 16435270 (-) True trnam-cau_51
trnam-cau_50 other downstream 401418 16431392 ~ 16431464 (-) True trnam-cau_50
XR_003403223.2 other downstream 452095 16377585 ~ 16380787 (-) False LOC113531235
TU459046 other downstream 1909498 14916662 ~ 14923384 (-) True ccdc84
XR_003403286.1 other downstream 2917385 13915364 ~ 13915497 (-) True LOC113531684
TU460427 other upstream 126912 16966288 ~ 16970026 (-) False crx
LOC117596251 other upstream 216207 17055583 ~ 17057882 (-) True LOC117596251
TU460777 other upstream 450968 17290344 ~ 17328020 (-) True G388705
XR_004577381.1 other upstream 698059 17537435 ~ 17544583 (-) False LOC113524239
TU460953 other upstream 828992 17668368 ~ 17727818 (-) False LOC117596207

Expression Profile