alkbh6 (alkbh6)


Basic Information

Item Value
gene id alkbh6
gene name alkbh6
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047621.1
NCBI id CM018567.1
chromosome length 18889892
location 17181191 ~ 17186675 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034300476.1
TAGGTGGCGCAATGTACGGCGCGTGCGAGCTGCCTGAACTCatagaagaagagaagaagaagaagaagaacaggaaATGACAAAAGACGAGTGAACTCTGGATACATCCCAAATATCTCGAGACGCCCTACTTAGGTGCACTACTTAACTAAGGAAGGAAGCACactaaatagtgcactatgtgaAGAAATTATCGCTATTTGGGATTCGGCCACTGGTTCTGTAGGTGATGTTGAAGCAGTTAGAATGGCAAAATCTGAAGTGATTTCTGAAGAGTTTGAAAGATACATTGTGAAAGATGCTCCACCGACTGTTTACTACATTCCAGACTTTATaacagaagcagaagaagagtATCTCCTACAGCAGgtgtacAAAGCCCCCAAGCCCAAATGGACACAGCTGTCAGGAAGGAGACTCCAGAACTGGGGAGGTCTTCCTCATCCGAAGGGGATGATTGCAGAGAAGCTCCCTGATTGGTTGCTGAGCTACACAGAAAAGATATCAGGCCTCGGAGCGTTTGCTGGGAAAAGCGCCAATCATGTGCTGGTGAACGAGTACAGGCCAGAGGAAGGCATCATgcctcATGAGGACGGGCCTCTGTATCACCCCACAGTAACAACCATCACTCTGGGTTCTCACACGCTGCTTGACTTCTACAGACCCGTCGATCAAACACAGacAGAAGTTCCTCAGACAGAGGAGAGCCGCTACATGCTGTCATTGTTGCTGCGGCGTCGCAGTTTGCTGATCCTGCAGGACGAGATGTACAAGCGCTACCTTCATGGGATCAGCAGCGTCGCCATGGATACGCTAACAGAGCGTGTGGTGAACCTGTCGATGGCGGGAGGGCAGGTAGGTGAGACGCTTCCCCGCAGAACCCGAGTTTCCCTCACCATCCGTCACGTGCCCAAAGTCTGCCGTGCCAACCTGCTGCTCGCCAGGAAGTGACACGATCACAGAGCCGGATGAACCAGGAGGCGACACCTGGCCAACTAGGAAGTGACATGATCATGAAGGCTTACATGCAGGAAGTGACATGACAAGACTCATATTTCAGGAACTGCCCGAATGTTTATAAACTTCCTACGAATTACATTAAGCTACAAAATCTGAGtttcaaataaacaattttgAATGTCACTAGGAGATTTCTGGTACAGTTCTGCTTCTTTGCTTCAGATTCATCCACAAGCTTCAGACTGTCCAGATTTCAGCTACCTGGCTTCTTACCAACATCCCAATCTGATACATTTCTACCCCTCTGCTCCAAAATCATTACTCCCTCCATTCCGTTCATTATCCTCCTCACGTCTACAGCAATTAAAGGTGAggtgtgtcatttttaaaaattgtttctCAACTTAACGGTAACAGTTTCACATTTCTCCCTAGAAAAACTGTGATTCACAACATTTCCATGCagtaatttctttatttcaggcttctgttgACATTCTCttaacatttttctggcccagcaattagctccgcccccagctGGAACAGAACGGctcacttttacacacttttttgaaTTCAGAAGATGATTCACAGAGCTTACGCACTTTcaatgtgtttttattgcaaGACAGCAGAGGACATTagataaatattacaaattgcTCCTTTAATAATCTCGCTGTATTTCTGACTTCTTCCTTCTTTAAGATCTTCCTCTTCTGTCCTGCTCACCGTCCCTCAAATAACCTTTGCTGTCAGGACCTTCCTTCCTCTAACACTCCGTCATTCTCTTTCACTATCTGTCTTTAAAGCACATCTACAAAACACTCGTCTGCTCTCTCTGGCCTTTAACGTTCACGGCTCTTCTTTGCATTTCTCATTTGCATTAACCACTTTAATGGTCAGCGTGTCGTCGTCTACTTTCTCTCGCTTCTCAAGCATCATAATCGCCTTGGAGTTTTTGAAAAGAGCAAGCcatataaaatgtgttgttgttattattattattattattattattattattactacaacgGCAAGAagaaaactgactttttttgaCCGTCACATGCGTGTAATTGTTATAATCGATTGTCGCTATTTGAGATATCAGCACATGATCTGTGAGAATGATTGTGAACTTGTaggtgaatttattttacatgcaCTTATTAAAGAAAATTGCACAACTGCA

Function

symbol description
alkbh6 Predicted to enable 2-oxoglutarate-dependent dioxygenase activity and metal ion binding activity. Predicted to be located in cytoplasm and nucleus. Orthologous to human ALKBH6 (alkB homolog 6).

NR:

description
alpha-ketoglutarate-dependent dioxygenase alkB homolog 6 isoform X2

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0016706 2-oxoglutarate-dependent dioxygenase activity molecular_function
GO:0046872 metal ion binding molecular_function

KEGG:

id description
K10768 ALKBH6; alkylated DNA repair protein alkB homolog 6

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034300476.1 True 2158 mRNA 0.44 7 17181191 17186675

Neighbor

gene id symbol gene type direction distance location
capns1a capns1,LOC107700232,LOC107548486,LOC107655908,LOC105909712,LOC105011036 coding downstream 755 17171198 ~ 17180436 (-)
zgc:153990 LOC108260006 coding downstream 11030 17164803 ~ 17170161 (-)
dlb dlb,LOC108260005,LOC107746357,LOC107596148,LOC108444019,LOC107683914,LOC105006902 coding downstream 26839 17144815 ~ 17154352 (-)
ppp1r14aa LOC108260008 coding downstream 37452 17134451 ~ 17143739 (-)
exoc3l2a LOC108260004,LOC108444026 coding downstream 49829 17113107 ~ 17131362 (-)
nova1 LOC108260001,LOC103044679,LOC108444022,LOC103394980,LOC107596194,LOC105901513,LOC107379798,LOC107655909,LOC107757545,LOC102216529,LOC107746355,LOC103138289 coding upstream 7640 17194315 ~ 17227066 (-)
micu2 micu2 coding upstream 40775 17227450 ~ 17238953 (-)
sptbn4a LOC108259765,LOC108414461,LOC107565414 coding upstream 55359 17242034 ~ 17272607 (-)
glra4b glra4b,LOC108259905,LOC108442052,LOC107741187,LOC107565418,LOC107680382 coding upstream 102398 17289073 ~ 17299481 (-)
aifm1 aifm1 coding upstream 113849 17300524 ~ 17316242 (-)
G388440 NA non-coding downstream 192176 16978449 ~ 16989015 (-)
G388406 NA non-coding downstream 230140 16945913 ~ 16951051 (-)
G388405 NA non-coding downstream 230655 16948975 ~ 16950536 (-)
G388400 NA non-coding downstream 330787 16843993 ~ 16850404 (-)
G388408 apoa4 non-coding downstream 343143 16829748 ~ 16838048 (-)
G388692 NA non-coding upstream 16111 17202786 ~ 17202992 (-)
G388698 LOC100304549,LOC100690460,LOC100219516,LOC106514001 non-coding upstream 95425 17282100 ~ 17284601 (-)
G388709 NA non-coding upstream 156404 17343079 ~ 17355359 (-)
G388754 NA non-coding upstream 223328 17410003 ~ 17411908 (-)
G388785 NA non-coding upstream 365520 17552195 ~ 17552678 (-)
crx crx other downstream 211165 16965966 ~ 16970026 (-)
fxyd2 NA other downstream 417715 16758240 ~ 16763476 (-)
LOC113531235 NA other downstream 800404 16363494 ~ 16380787 (-)
gltpd2 LOC108260402 other downstream 1293132 15882338 ~ 15888059 (-)
nrgna NA other downstream 2154322 15018893 ~ 15026869 (-)
G388705 nono,LOC103047741,LOC107672625,LOC107741185,LOC107756548 other upstream 103669 17290344 ~ 17328020 (-)
LOC113524239 NA other upstream 348752 17535427 ~ 17544583 (-)
LOC117596207 LOC108262004,LOC108262359,LOC108260034,LOC108260038 other upstream 481693 17668368 ~ 17727825 (-)
G389092 NA other upstream 688240 17874915 ~ 18277958 (-)
smarca1 LOC108260009,LOC103034185,LOC105028962,LOC106603320,LOC106567799 other upstream 887037 18073712 ~ 18094773 (-)

Expression


Co-expression Network