RNA id: unassigned_transcript_2538


Basic Information

Item Value
RNA id unassigned_transcript_2538
length 73
RNA type tRNA
GC content 0.60
exon number 1
gene id trnam-cau_117
representative True

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 2130069 ~ 2130141 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCCTCGTTGGCGCAGTAGGCAGCGCGTCAGTCTCATAATCTGAAGGTCGTGAGTTCGAGCCTCACACGGGGca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU219305 lncRNA upstream 11496 2117365 ~ 2118573 (+) True G148393
TU219284 lncRNA upstream 116509 1993694 ~ 2013560 (+) True LOC122328034
XR_006247749.1 lncRNA upstream 116510 1999444 ~ 2013559 (+) False LOC122328034
XR_006247748.1 lncRNA upstream 116510 2003262 ~ 2013559 (+) False LOC122328034
XR_006247758.1 lncRNA upstream 172489 1956214 ~ 1957580 (+) True LOC122328043
TU219314 lncRNA downstream 8122 2138263 ~ 2138759 (+) True G148401
TU219318 lncRNA downstream 10366 2140507 ~ 2142350 (+) True G148402
TU219321 lncRNA downstream 10366 2140507 ~ 2142350 (+) False G148402
TU219327 lncRNA downstream 12960 2143101 ~ 2144072 (+) True G148403
TU219328 lncRNA downstream 12960 2143101 ~ 2143735 (+) False G148403
XM_043223712.1 mRNA upstream 10003 2106766 ~ 2120066 (+) True zgc:174224
XM_043223711.1 mRNA upstream 10003 2118973 ~ 2120066 (+) False zgc:174224
XM_043223578.1 mRNA upstream 25028 2054359 ~ 2105041 (+) True LOC122327908
XM_043223609.1 mRNA upstream 37974 2084409 ~ 2092095 (+) True LOC122327922
XM_043223579.1 mRNA upstream 76978 1964794 ~ 2053091 (+) True LOC122327909
XM_043223939.1 mRNA downstream 16544 2146685 ~ 2147805 (+) True cep19
XM_043223389.1 mRNA downstream 26094 2156235 ~ 2183233 (+) False impact
XM_043223386.1 mRNA downstream 26096 2156237 ~ 2183146 (+) True impact
XM_043223388.1 mRNA downstream 26096 2156237 ~ 2183146 (+) False impact
XM_043223390.1 mRNA downstream 26096 2156237 ~ 2183146 (+) False impact
TU219150 other upstream 249186 1621992 ~ 1880883 (+) True LOC122328040
TU219247 other upstream 272934 1854873 ~ 1857135 (+) False LOC122327951
XR_006247737.1 other upstream 491063 1626562 ~ 1639006 (+) False LOC122327950
TU219153 other upstream 504879 1624472 ~ 1625190 (+) True G148295
unassigned_transcript_2534 other upstream 697692 1432305 ~ 1432377 (+) True trnam-cau_116
TU219297 other downstream 13744 2143885 ~ 2145560 (+) True G148388
XR_006247636.1 other downstream 914497 3044638 ~ 3047776 (+) False loxl5a
XR_006247629.1 other downstream 984061 3114202 ~ 3152565 (+) False LOC122327293
XR_006247630.1 other downstream 984061 3114202 ~ 3152436 (+) False LOC122327293
TU220335 other downstream 1093487 3223628 ~ 3224490 (+) False tma7

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
eurasian perch (Perca fluviatilis) unassigned_transcript_1561 True 73 tRNA 0.60 1 NC_053135.1 4223852 ~ 4223924 (+)
striped catfish (Pangasianodon hypophthalmus) trnam-cau_51 True 73 tRNA 0.60 1 NC_047621.1 16435198 ~ 16435270 (-)
tiger barb (Puntius tetrazona) unassigned_transcript_1561 True 71 tRNA 0.56 1 NC_056709.1 1146971 ~ 1147041 (-)
mexican tetra (Astyanax mexicanus) trnam-cau_89 True 73 tRNA 0.60 1 NW_019172716.1 228464 ~ 228536 (-)
mexican tetra (Astyanax mexicanus) trnam-cau_51 True 72 tRNA 0.60 1 NW_019170817.1 2963 ~ 3034 (+)