RNA id: XM_043223712.1


Basic Information

Item Value
RNA id XM_043223712.1
length 1568
RNA type mRNA
GC content 0.48
exon number 4
gene id zgc:174224
representative True

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 2106766 ~ 2120066 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATATCCCCATCAGTCTACAAGTGAAGACGAGCCTCAAAGCATCAGAAAAAAGAGTTTATTGAAGGACAGAGAGAACATGAGAGATCCAGAACCCTGCAGAATGAAACGCACTGAAGAACAAACAGAACCTGGATCCTTCTTCTACGCAGCCATGATGTTGTAATCGATGCAGTATGTGGTCTGGCATTGTCGTGTTGAAATAATGCAAGTTCTTGCCTGAAAGAGACAACTtctggatgggagcatatgttgttctagaacTTGGATATACCTTTCAGGattgatggtgcctttccagaTGTGTAAGCTGCCACAGTCCATTTTAGATGGCCCAGAGAAAACACCTTCTGGATCATGTTTAGACCTAATGGAGAAACATCatgtcaaaaatgaaaaaatcaatGTCAAGTCACAGACTGAGGGTATCTCTTTACTGGACACAAGAGACAAGAAAAGTTATGGCTGCTCTCAGTGCGGCAAGAATTTGACATGCAAGAAGAGTCTGAAGATTCACATGAAGATCCACACGGGAACGAAACCTTACACATGTGagcagtgcgggaagagtttgACATGCAAGAAGAGTCTGAAGATccacatgaggatccacacaGGAGAAAAACCGTACAcatgtgatcagtgcgggaagagtttcagGCAACAAGGACACCTGAAGGACCACATGAACGTCCACAGCGTGGAGAAGCCGCACCCATGTGGTCAGTGTGGCAAGTGTTTCGCTTACAAACAGAGTCTCAAGGCTCACATGAAGATCCACACGGGAGAGAAGCCGTACACGTGcgatcagtgcgggaagagatTCAGACAGTCGTCGCACCTTAAAGAGCACATGAACagccacggtgtagaggagttGTACACAGCCAAGAAATCTTTCATCTGCACTGAGTGTGGAAAGACTTTGACGTATAAATACAGTCTCGATGTtcacatgaggatccacaccggagagaaaccctaCACGTGCTATTACTGCGAAAAGAGCTTCACGCAGTCGGCAAACCTCAAGGACCACATGAAGATCCACACCGGGGAGAAACCGCACGAATGCGATCAGTGCGGAAGAACCTTTCTGTGGATCTCAAACATGAAGAAGCACATGGCGGTTCACTCCGCGGAGAAACCGCATGCGTGCCCTTCGTGCGGCAAGAGCTTTTCGTGTCTGCGAAGTTTAAAAGTGCATCAGAGGATACACAGCGGTGTGAGGGATTACATGTGCTGCGAGTGTGAGAAGACCTTTCTGACCGCCGATAAACTGAAGCGGCACCaaaggatccacaccggagagaaaccttacaagtgttcacactgcGGCAAGAGATTCAGCCAGCTAGAAACCCTGAAGTCCCACGacaggatccacaccggagagaaaccctaTCACTGCGCTGcttgcgggaagagcttcaatCGATCGTCTTCTTTACACAGGCACACGAGAAACAAGCACAACAAGATCTTCAGAGCCAGCTCTTGAAGCTCTGACCGGACATGCATCTAGACCTAAAATATCTTCTGTGTGAATCTGTCCAGACAAAGAAGCGCCA

Function

GO:

id name namespace
GO:0005488 binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU219284 lncRNA upstream 93206 1993694 ~ 2013560 (+) True LOC122328034
XR_006247749.1 lncRNA upstream 93207 1999444 ~ 2013559 (+) False LOC122328034
XR_006247748.1 lncRNA upstream 93207 2003262 ~ 2013559 (+) False LOC122328034
XR_006247758.1 lncRNA upstream 149186 1956214 ~ 1957580 (+) True LOC122328043
TU219238 lncRNA upstream 187943 1917581 ~ 1918823 (+) True G148344
TU219314 lncRNA downstream 18197 2138263 ~ 2138759 (+) True G148401
TU219318 lncRNA downstream 20441 2140507 ~ 2142350 (+) True G148402
TU219321 lncRNA downstream 20441 2140507 ~ 2142350 (+) False G148402
TU219327 lncRNA downstream 23035 2143101 ~ 2144072 (+) True G148403
TU219328 lncRNA downstream 23035 2143101 ~ 2143735 (+) False G148403
XM_043223578.1 mRNA upstream 1725 2054359 ~ 2105041 (+) True LOC122327908
XM_043223609.1 mRNA upstream 14671 2084409 ~ 2092095 (+) True LOC122327922
XM_043223579.1 mRNA upstream 53675 1964794 ~ 2053091 (+) True LOC122327909
XM_043223612.1 mRNA upstream 71176 2013792 ~ 2035590 (+) True LOC122327925
XM_043223832.1 mRNA upstream 157399 1942150 ~ 1949367 (+) True LOC122328122
XM_043223939.1 mRNA downstream 26619 2146685 ~ 2147805 (+) True cep19
XM_043223389.1 mRNA downstream 36169 2156235 ~ 2183233 (+) False impact
XM_043223386.1 mRNA downstream 36171 2156237 ~ 2183146 (+) True impact
XM_043223388.1 mRNA downstream 36171 2156237 ~ 2183146 (+) False impact
XM_043223390.1 mRNA downstream 36171 2156237 ~ 2183146 (+) False impact
TU219150 other upstream 225883 1621992 ~ 1880883 (+) True LOC122328040
TU219247 other upstream 249631 1854873 ~ 1857135 (+) False LOC122327951
XR_006247737.1 other upstream 467760 1626562 ~ 1639006 (+) False LOC122327950
TU219153 other upstream 481576 1624472 ~ 1625190 (+) True G148295
unassigned_transcript_2534 other upstream 674389 1432305 ~ 1432377 (+) True trnam-cau_116
unassigned_transcript_2538 other downstream 10003 2130069 ~ 2130141 (+) True trnam-cau_117
TU219297 other downstream 23819 2143885 ~ 2145560 (+) True G148388
XR_006247636.1 other downstream 924572 3044638 ~ 3047776 (+) False loxl5a
XR_006247629.1 other downstream 994136 3114202 ~ 3152565 (+) False LOC122327293
XR_006247630.1 other downstream 994136 3114202 ~ 3152436 (+) False LOC122327293

Expression Profile