LOC122328040


Basic Information

Item Value
gene id LOC122328040
gene name NA
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 1621992 ~ 1880883 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU219148
GGACAGAAAGATCTCGGTCGTCATCAACACTCACCTGCTCCAGACGCATCTCTCCCATCAGCAGGTCACACGCCGCGTGAGAGAGTGCGTGCGTCTGTCTGCTCCGGGGCCGCAGGTGATCCTACTCGTCCTGCAGCGGCACGACTTCGGCGAGGACGACAGACACCGAGCGAAAACCGCGCTGAAGCTCTTCGGTAAACGGGCCGTGAGACACACCATAGTGCTGACCACCAATGAAGAGGCACGCGGAGCAGTGGTCACTTCTAAGAGTAACGCCGTTCGTGATTTAATAACGGAGTGCGGAGGAGGGCACCTGCGCTTCGACGCGGTGAGAGCCGAGTTCTTCAAAAAGACCCAGGAGATACTCCTGAGAGAACGTGAAGAGTATCTCATCTGTGGCACGTTTGAGGATGAAGATCTCAAAGAGAGCACAGAATCACGAGCCGGAGGAGTTATTCAATCAAGACGAACGGAAAAAGGAGCCTTCAAGACGCAGTTTgactacagtaaaaacagttcGGTGCTGATGATACCGTGCTAAAATGTGACAAGCGGATGGA
>TU219150
AACACATCGATGCTCTTTCATCGGATCAATTGGAGAAGAAACCGCGTTTCTCGAAATTCAATTctggtttaaagaaaaaaagaatcgCATAGTTTAACTCAATGACAGTTTTTCTGCGTGTCTGCAGGCGGGGCGCAGGGCAGCTCTCTCCAGCAGCGCTTCTTCTTTCGGTTTCGATGCCTGTGGATAAATGGCGTCAGAAGCAGGTAGACGTAGTCCACCATTTGATCGTCCTGACATGAGCGACCTGAGGGTCGTGCTTCTAGGAAAGAACAGATCAGAAAACAGACGGGTGGCAAAGGCTTTACTGGATACAATAGTGTTTGGCGAAGTGGCCGTCTCATTCACTGCAGGACAGTGAGAGAATCACAGGAGTAACGCAGGACAGAAAGATCTCGGTCGTCATCAACACTCACCTGCTCCAGACGCATCTCTCCCATCAGCAGGTCACACGCCGCGTGAGAGAGTGCGTGCGTCTGTCTGCTCCGGGGCCGCAGGTGATCCTACTCGTCCTGCAGCGGCACGACTTCGGCGAGGACGACAGACACCGAGCGAAAACCGCGCTGAAGCTCTTCGGTAAACGGGCCGTGAGACACACCATAGTGCTGACCACCAATGAAGAGGCACGCGGAGCAGTGGTCACTTCTAAGAGTAACGCCGTTCGTGATTTAATAACGGAGTGCGGAGGAGGGCACCTGCGCTTCGACGCGGTGAGAGCCGAGTTCTTCAAAAAGACCCAGGAGATACTCCTGAGAGAACGTGAAGAGTATCTCATCTGTGGCACGTTTGAGGATGAAGATCTCAAAGAGAGCACAGAATCACGAGCCGGAGGAGTTATTCAATCAAGACGAACGGAAAAAGGAGCCTTCAAGACGCAGTTTGACTACAGTAAAAAACAGTTCGGTGCTGATGATACCGTGCTAAAATGTGACAAGCGGATGGACGACACAACTTTAGATGATGACCCCAGTATTCAGAGAGTAGAGATGTCTTGTGGTCATGCGGTGACCCCAAAAACCCTGACCGGCTGGTGTCGCAGTCTGCTGGACCAGGGTCAGTATAAATTTTATTGCCCAGCTTTCAAAGACGGGACAGAGAAATGTAATGTGGAGTGGCGTTTGGAGGTCAAGATGTTGCTCAGCGATTCAGAGCAGGCTCACTTCGAGGAGAAGGTGTCTCTTCTGGCAGCAGCTGAGCACTGCGACTTAAGATCATGTCCGAACTGTGGGTCCTACGTGGAGCGAGAAGACCTGAGTAACCTCTGCGTGAGATGCACCATCTGTACATCTGTGAAAAACAAGACCTACCAGTTCTGCTGGCAGTGTCTGAGAGAATGGAGAGGAGCAGCTGGTCATGCTCTCGCTGCGGTCATGAAGACTGCGCGTCAACCCAGACGTCGACAAGCTAGCAAAGTGTACAGATATGAGGCTGTCTTACGTGGAGAACGTGGAGTGTCCGGCCATCCGGGCCTGTCCGAC
>TU219151
AACACATCGATGCTCTTTCATCGGATCAATTGGAGAAGAAACCGCGTTTCTCGAAATTCAATTctggtttaaagaaaaaaagaatcgCATAGTTTAACTCAATGACAGTTTTTCTGCGTGTCTGCAGGCGGGGCGCAGGGCAGCTCTCTCCAGCAGCGCTTCTTCTTTCGGTTTCGATGCCTGTGGATAAATGGCGTCAGAAGCAGGTAGACGTAGTCCACCATTTGATCGTCCTGACATGAGCGACCTGAGGGTCGTGCTTCTAGGAAAGAACAGATCAGAAAACAGACGGGTGGCAAAGGCTTTACTGGATACAATAGTGTTTGGCGAAGTGGCCGTCTCATTCACTGCAGGACAGTGAGAGAATCACAGGAGTAACGCAGGACAGAAAGATCTCGGTCGTCATCAACACTCACCTGCTCCAGACGCATCTCTCCCATCAGCAGGTCACACGCCGCGTGAGAGAGTGCGTGCGTCTGTCTGCTCCGGGGCCGCAGGTGATCCTACTCGTCCTGCAGCGGCACGACTTCGGCGAGGACGACAGACACCGAGCGAAAACCGCGCTGAAGCTCTTCGGTAAACGGGCCGTGAGACACACCATAGTGCTGACCACCAATGAAGAGGCACGCGGAGCAGTGGTCACTTCTAAGAGTAACGCCGTTCGTGATTTAATAACGGAGTGCGGAGGAGGGCACCTGCGCTTCGACGCGGTGAGAGCCGAGTTCTTCAAAAAGACCCAGGAGATACTCCTGAGAGAACGTGAAGAGTATCTCATCTGTGGCACGTTTGAGGATGAAGATCTCAAAGAGAGCACAGAATCACGAGCCGGAGGAGTTATTCAATCAAGACGAACGGAAAAAGGAGCCTTCAAGACGCAGTTTGACTACAGTAAAAAACAGTTCGGTGCTGATGATACCGTGCTAAAATGTGACAAGCGGATGGACGACACAACTTTAGATGATGACCCCAGTATTCAGAGAGTAGAGATGTCTTGTGGTCATGCGGTGACCCCAAAAACCCTGACCGGCTGGTGTCGCAGTCTGCTGGACCAGG
>XR_006247755.1
ACACATCGATGCTCTTTCATCGGATCAATTGGAGAAGAAACCGCGTTTCTCGAAATTCAATTctggtttaaagaaaaaaagaatcgCATAGTTTAACTCAATGACAGTTTTTCTGCGTGTCTGCAGGCGGGGCGCAGGGCAGCTCTCTCCAGCAGCGCTTCTTCTTTCGGTTTCGATGCCTGTGGATAAATGGCGTCAGAAGCAGGTAGACGTAGTCCACCATTTGATCGTCCTGACATGAGCGACCTGAGGGTCGTGCTTCTAGGAAAGAACAGATCAGAAAACAGACGGGTGGCAAAGGCTTTACTGGATACAATAGTGTTTGGCG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU219148 False 560 lncRNA 0.54 2 1622892 1624279
TU219150 True 1478 TUCP 0.52 7 1621992 1880883
TU219151 False 1053 lncRNA 0.52 5 1621992 1880171
XR_006247755.1 False 328 lncRNA 0.47 3 1621993 1622838

Neighbor

gene id symbol gene type direction distance location
LOC122327993 NA coding upstream 25373 1592160 ~ 1596619 (+)
LOC122327901 LOC107745441 coding upstream 100785 1161343 ~ 1521207 (+)
LOC122327926 LOC568664 coding upstream 113671 1502513 ~ 1508321 (+)
LOC122327918 LOC107710809,LOC107574827,LOC107667624,LOC107698297,LOC107575765,LOC107570670 coding upstream 176620 1437791 ~ 1445372 (+)
trnam-cau_116 NA coding upstream 189615 1432305 ~ 1432377 (+)
LOC122328120 NA coding downstream 6728 1887611 ~ 1891509 (+)
LOC122328023 irf6 coding downstream 20883 1901766 ~ 1907032 (+)
eps8l3a LOC107662821,LOC107711382,LOC107571173,LOC107725338,LOC107698279,LOC107599104 coding downstream 27202 1908085 ~ 1915043 (+)
LOC122328121 NA coding downstream 50708 1931591 ~ 1940567 (+)
LOC122328122 NA coding downstream 61267 1942150 ~ 1949367 (+)
G148224 NA non-coding upstream 75099 1489399 ~ 1546893 (+)
LOC122328048 NA non-coding upstream 129511 1491444 ~ 1492481 (+)
G148255 NA non-coding upstream 193701 1378899 ~ 1428291 (+)
G148260 NA non-coding upstream 204540 1409917 ~ 1417452 (+)
LOC122328038 NA non-coding upstream 215885 1401845 ~ 1406107 (+)
LOC122328033 NA non-coding downstream 11469 1892352 ~ 1894308 (+)
LOC122328051 NA non-coding downstream 19309 1900192 ~ 1901491 (+)
G148344 NA non-coding downstream 36698 1917581 ~ 1918823 (+)
LOC122328043 NA non-coding downstream 75331 1956214 ~ 1957580 (+)
LOC122328034 NA non-coding downstream 112811 1993694 ~ 2013560 (+)
G148222 NA other upstream 237145 1379291 ~ 1384847 (+)
LOC122327965 NA other upstream 473190 1137717 ~ 1148802 (+)
G148233 LOC107571167,LOC107662825,LOC107663547 other upstream 494762 1125486 ~ 1127230 (+)
G148214 wdr77 other upstream 605325 1015779 ~ 1016667 (+)
G147888 LOC107732183,LOC107723096,LOC107572363,LOC107698292,LOC107750676,LOC107656899 other upstream 827986 791234 ~ 794006 (+)
G148388 NA other downstream 263002 2143885 ~ 2145560 (+)
LOC122327475 NA other downstream 1078217 2959100 ~ 2963003 (+)
loxl5a loxl5a,LOC107698563,LOC107549379,LOC107733348,LOC108430202,LOC105011451 other downstream 1163755 3044638 ~ 3048132 (+)
LOC122327293 myo9b,LOC107566354,LOC107702620,LOC107549373,LOC107698595,LOC107718479 other downstream 1233318 3114201 ~ 3153581 (+)
tma7 NA other downstream 1342734 3223617 ~ 3224491 (+)

Expression


Co-expression Network