loxl5a (loxl5a,LOC107698563,LOC107549379,LOC107733348,LOC108430202,LOC105011451)


Basic Information

Item Value
gene id loxl5a
gene name loxl5a,LOC107698563,LOC107549379,LOC107733348,LOC108430202,LOC105011451
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 3044638 ~ 3048132 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043222643.1
AGACGAGCTGAATTTCATCTTGGAAGACCATTGACTATTAACTAACGTCCATGGTTTTccccttttaaaataaatggtcctgtcttaaaatgaaaaattacatgACTAACATTCCTGGGTTTTTCTTTTCCCCTCACAAATTAGCTTGCATTTGACCCATagattatttttacaaaaacataaccttttaaatttatatagtAATCTCCGTGATCAAATAATCATCCTTTCCGCTCTAAAACAAGTTCCAGCCCAGCTCTACTATTTATTGCTGCGTCCAACAAGGCCTATGGCTGATGTTCAACctgcatgaaaacaaacattgtcTAGACTTTTTCCTGAATAAACCTTGAGCTCATGTTTTAAACTCGACGTTGAATGTGcctatgtgtttttaaatagtgtCCCTTTCTCATATGACAAATGCCTACATATTCACTTCAAATATTTGTGCAATGAAATACGTGGAAGGGGAAAGTGAAGACATTCATCGCTGTTAGGAGCAATTGTCGTCACTGGGAGATTGGAATCGTTTAAATTTCGTAGGGCTGAGATGCCcacattatttaatgtgttttattgataAAGAGGTAATTATGTTAACATTATGCCAGTAATGAACCCATATGCAATAAACTCCCTCTAGTGGTAATACCAATCGAAGAAAGAAAGACTAGAAAACGTATAGACTATgggatttctttttaaataactgccTTTATTATTAAGGTGGCAccacatttaattttagtaaatgtGGGGTTTGCCCGTTATGTGAAACATGCAGGAGGAAAAAGtgcaaaaggaaagaaagaaacgcCTCACAGTGTACCGCCTTCTTCTGTACCTGGGcttatttaaaagcttttggGAGCACAAAGTGCTGCAGTTTCTCCTGCTACCTGctcaaaattacaaatatagtcattcttttaaaatgacaaaatattcatttattctatTCTTCTCCATACACTTGTTCATCCTGGTCTGTTTGAGCGCCGCACAGCACCATGGACCCTGGAGACACAAGGTTAAGTGGGAAACTAACGGACAGGTTTACAGTTTGCTGAGCACCGCTTCTCAGTATCACACACCTGTTTCTGGAAAACGGAATGGCAGGTTTTTACTGACGAGGCATATGCCAGCATTCTCGAGCAGGCTTTTTATAGGACGTTTTGGCAGTACCAAGACACACGCAGTTGGGCATGCGGTGCATTCAAACTCCGTGCCAGAGCACAGTCTTGGTGTGGATGCAAGACCTTACATGATAGCTGGTTATGCGTCTCACGTGAGGAACAATAACCAGTTGCCTTTGCATGCGAAAAGAACTGCGCTTTCTTCAGATGAACTGCAATATGGGACAGCCCCAACTGGCACAACTACACTGGAAGCCTCAGGGAGCTCAAGAGCATCCAGACGCCGTAATTTAGTTACCAGCGCACCAGTGCCAAAACGAACATCTACCAGAAAACCATCCGCTATTCATTCTGAGGAGAATCAGCTTCCTCAACCTCAACTTTCCACTTTGACTTGGAGTAAAACAGCTAATAAATCCAAACTTCTAACACGACCCAATTCAGCTGCACCCTCAGCAGCTGTtaatatcagaaatacagtaatacgTCCTCCATTCCAGGCTGAGGAAAGAGGAGGTGACAACATGATTGGTGATGAACCAACTAATCCTCAAGTAAACAACAGAAACTCTTTTCACTATAATCTGCTCCCGTATGGAAGTGGTGACAGATCTCCTCAGAGAGAAACGGGACACGGTACAAGCTATTTTCATAACGGTCTGCCTGATCTCATTCCTGACCCTTATTACATCCAAGCAGCATCTTATATCCAGAGAGTTCAGATGTACACATTAAGATGTGCTGCAGAAGAGAACTGCCTCTCCAGTTCTGCGTACGACTCCAGAGTGAGAGACCTTGATTACAGAGTGCTGCTCAGATTTCCTCAGAGGGTCAAAAATCAAGGCACTGCAGATTTTCTCCCTGTGAAACCACATCATCAATGGGAATGGCACAGCTGCCATCAACATTATCACAGCATGGATGCCTTCAGCGACTACGACCTCCTGGATGCCTCCACGGGCAGAAAGGTGGCTGAGGGACATAAAGCCAGTTTCTGTCTGGAGGACACCAGCTGCGATCCAGGTGTGAGGAGAAGATACGCCTGCACAGCTCACACACAGGGATTGGGCCCAGGCTGCTATGACACCTACCATGCCAACATCGACTGCCAGTGGATTGATATTACAGATGTTTCTCCTggagattatattttaaaaGTAACCGTGAACCCAGGTTTCCAGGTTCAAGAGTCTGACTTCTCAAATAACGTTGTTAGATGCGACATCAGATACACAGGGACGTACGTTCAAGCAAGTAACTGCAGAATCACAGGatAATGATCCAGTTTGCATCATTCAAACTTCCAGTGGTGAAATCATCCAAACATGTCTTTGTAGATTAGGTATAATTCGACTTATTTTCTCAGTGACTGTGACATATTTAGTAAAGCTAAAATAAGTTCCAATAATGGTATACAATGAATATTTGTTAATACCTTTTGTAATATAAGGAAATATTCAATTACATAttctatttattgtatttatttaatgctgtaATTTGGTGTAACCTTTGGTGCTAAAGTTTCAGTAAAACTCaagtaaatatatgtatgttttg
>XM_043222644.1
CCAGAGTGAGAGACCTTGATTACAGAGTGCTGCTCAGATTTCCTCAGAGGGTCAAAAATCAAGGCACTGCAGATTTTCTCCCTGTGAAACCACATCATCAATGGGAATGGCACAGCTGCCATCAGTAGGTTTCTGACAATTTATGTTCCACAACATCCACACATCAGTATTCACCTCGTTTCTACAGAAAAATAGAAGAAAGGACATTATCACAGCATGGATGCCTTCAGCGACTACGACCTCCTGGATGCCTCCACGGGCAGAAAGGTGGCTGAGGGACATAAAGCCAGTTTCTGTCTGGAGGACACCAGCTGCGATCCAGGTGTGAGGAGAAGATACGCCTGCACAGCTCACACACAGGGATTGGGCCCAGGCTGCTATGACACCTACCATGCCAACATCGACTGCCAGTGGATTGATATTACAGATGTTTCTCCTggagattatattttaaaaGTAACCGTGAACCCAGGTTTCCAGGTTCAAGAGTCTGACTTCTCAAATAACGTTGTTAGATGCGACATCAGATACACAGGGACGTACGTTCAAGCAAGTAACTGCAGAATCACAGGatAATGATCCAGTTTGCATCATTCAAACTTCCAGTGGTGAAATCATCCAAACATGTCTTTGTAGATTAGGTATAATTCGACTTATTTTCTCAGTGACTGTGACATATTTAGTAAAGCTAAAATAAGTTCCAATAATGGTATACAATGAATATTTGTTAATACCTTTTGTAATATAAGGAAATATTCAATTACATAttctatttattgtatttatttaatgctgtaATTTGGTGTAACCTTTGGTGCTAAAGTTTCAGTAAAACTCaagtaaatatatgtatgttttg
>XR_006247636.1
AGACGAGCTGAATTTCATCTTGGAAGACCATTGACTATTAACTAACGTCCATGGTTTTccccttttaaaataaatggtcctgtcttaaaatgaaaaattacatgACTAACATTCCTGGGTTTTTCTTTTCCCCTCACAAATTAGCTTGCATTTGACCCATagattatttttacaaaaacataaccttttaaatttatatagtAATCTCCGTGATCAAATAATCATCCTTTCCGCTCTAAAACAAGTTCCAGCCCAGCTCTACTATTTATTGCTGCGTCCAACAAGGCCTATGGCTGATGTTCAACctgcatgaaaacaaacattgtcTAGACTTTTTCCTGAATAAACCTTGAGCTCATGTTTTAAACTCGACGTTGAATGTGcctatgtgtttttaaatagtgtCCCTTTCTCATATGACAAATGCCTACATATTCACTTCAAATATTTGTGCAATGAAATACGTGGAAGGGGAAAGTGAAGACATTCATCGCTGTTAGGAGCAATTGTCGTCACTGGGAGATTGGAATCGTTTAAATTTCGTAGGGCTGAGATGCCcacattatttaatgtgttttattgataAAGAGGTAATTATGTTAACATTATGCCAGTAATGAACCCATATGCAATAAACTCCCTCTAGTGGTAATACCAATCGAAGAAAGAAAGACTAGAAAACGTATAGACTATgggatttctttttaaataactgccTTTATTATTAAGGTGGCAccacatttaattttagtaaatgtGGGGTTTGCCCGTTATGTGAAACATGCAGGAGGAAAAAGtgcaaaaggaaagaaagaaacgcCTCACAGTGTACCGCCTTCTTCTGTACCTGGGcttatttaaaagcttttggGAGCACAAAGTGCTGCAGTTTCTCCTGCTACCTGctcaaaattacaaatatagtcattcttttaaaatgacaaaatattcatttattctatTCTTCTCCATACACTTGTTCATCCTGGTCTGTTTGAGCGCCGCACAGCACCATGGACCCTGGAGACACAAGGTTAAGTGGGAAACTAACGGACAGGTTTACAGTTTGCTGAGCACCGCTTCTCAGTATCACACACCTGTTTCTGGAAAACGGAATGGCAGGTTTTTACTGACGAGGCATATGCCAGCATTCTCGAGCAGGCTTTTTATAGGACGTTTTGGCAGTACCAAGACACACGCAGTTGGGCATGCGGTGCATTCAAACTCCGTGCCAGAGCACAGTCTTGGTGTGGATGCAAGACCTTACATGATAGCTGGTTATGCGTCTCACGTGAGGAACAATAACCAGTTGCCTTTGCATGCGAAAAGAACTGCGCTTTCTTCAGATGAACTGCAATATGGGACAGCCCCAACTGGCACAACTACACTGGAAGCCTCAGGGAGCTCAAGAGCATCCAGACGCCGTAATTTAGTTACCAGCGCACCAGTGCCAAAACGAACATCTACCAGAAAACCATCCGCTATTCATTCTGAGGAGAATCAGCTTCCTCAACCTCAACTTTCCACTTTGACTTGGAGTAAAACAGCTAATAAATCCAAACTTCTAACACGACCCAATTCAGCTGCACCCTCAGCAGCTGTtaatatcagaaatacagtaatacgTCCTCCATTCCAGGCTGAGGAAAGAGGAGGTGACAACATGATTGGTGATGAACCAACTAATCCTCAAGTAAACAACAGAAACTCTTTTCACTATAATCTGCTCCCGTATGGAAGTGGTGACAGATCTCCTCAGAGAGAAACGGGACACGGTACAAGCTATTTTCATAACGGTCTGCCTGATCTCATTCCTGACCCTTATTACATCCAAGCAGCATCTTATATCCAGAGAGTTCAGATGTACACATTAAGATGTGCTGCAGAAGAGAACTGCCTCTCCAGTTCTGCGTACGACTCCAGAGTGAGAGACCTTGATTACAGAGTGCTGCTCAGATTTCCTCAGAGGGTCAAAAATCAAGGCACTGCAGATTTTCTCCCTGTGAAACCACATCATCAATGGGAATGGCACAGCTGCCATCAACATTATCACAGCATGGATGCCTTCAGCGACTACGACCTCCTGGATGCCTCCACGGGCAGAAAGGTGGCTGAGGGACATAAAGCCAGTTTCTGTCTGGAGGACACCAGCTGCGATCCAGGGATTGGGCCCAGGCTGCTATGACACCTACCATGCCAACATCGACTGCCAGTGGATTGATATTACAGATGTTTCTCCTggagattatattttaaaaGTAACCGTGAACCCAGGTTTCCAGGTTCAAGAGTCTGACTTCTCAAATAACGTTGTTAGATGCGACATCAGATACACAGGGACGTACGTTCAAGCAAGTAACTGCAGAATCACAGG

Function

symbol description
loxl5a Predicted to enable protein-lysine 6-oxidase activity. Predicted to be involved in collagen fibril organization and peptidyl-lysine oxidation. Predicted to be located in extracellular region. Predicted to be active in extracellular space. Is expressed in notochord.

NR:

description
PREDICTED: protein-lysine 6-oxidase-like

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0005507 copper ion binding molecular_function
GO:0016641 oxidoreductase activity, acting on the CH-NH2 group of donors, oxygen as acceptor molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043222643.1 True 2699 mRNA 0.41 7 3044638 3048132
XM_043222644.1 False 859 mRNA 0.40 5 3046935 3048132
XR_006247636.1 False 2374 transcript 0.43 6 3044638 3047776

Neighbor

gene id symbol gene type direction distance location
LOC122327553 mibp,LOC107566367,LOC107702642,LOC107727561,LOC107734093,LOC107698603,LOC107549391 coding upstream 147 3041516 ~ 3044491 (+)
atcaya atcaya,LOC107698602,LOC107727562,LOC107702639,LOC108430235 coding upstream 4079 3035058 ~ 3040559 (+)
c22h19orf44 NA coding upstream 67056 2968495 ~ 2977582 (+)
cers4a cers4a,LOC107561597,LOC107717160 coding upstream 168722 2868088 ~ 2875916 (+)
LOC122327634 ctxn1,LOC108441290,LOC106573568 coding upstream 260108 2770754 ~ 2784530 (+)
mydgf mydgf,LOC107727555,LOC107702644,LOC107733317,LOC107698601,LOC107549393,LOC566052,LOC107566370 coding downstream 993 3049125 ~ 3052719 (+)
cers1 cers1,LOC107702637,LOC107566364,LOC107698599,LOC107733357 coding downstream 18794 3066926 ~ 3079915 (+)
LOC122327513 NA coding downstream 115559 3163691 ~ 3166821 (+)
LOC122327489 LOC107702645,LOC107566368 coding downstream 127752 3175884 ~ 3180904 (+)
LOC122327485 LOC107718467,LOC107549388,LOC107698584,LOC107702645,LOC107566368 coding downstream 140270 3188402 ~ 3193102 (+)
G148830 NA non-coding upstream 52226 2990285 ~ 2992412 (+)
LOC122327636 NA non-coding upstream 188554 2806603 ~ 2856084 (+)
G148781 fbn2b,ctxn1,LOC107549363,LOC107742800,LOC107704489,LOC108441290,LOC106573568 non-coding upstream 206689 2770775 ~ 2837949 (+)
G148742 NA non-coding upstream 525496 2518930 ~ 2519142 (+)
G148452 NA non-coding upstream 704227 2338819 ~ 2340411 (+)
G148926 NA non-coding downstream 54440 3102572 ~ 3102903 (+)
G148942 LOC107702631,LOC107698575,LOC107549383 non-coding downstream 135396 3183528 ~ 3189154 (+)
G148973 NA non-coding downstream 177077 3225209 ~ 3226579 (+)
G148975 NA non-coding downstream 179572 3227704 ~ 3228830 (+)
G148979 NA non-coding downstream 197009 3245141 ~ 3245582 (+)
LOC122327475 NA other upstream 81635 2959100 ~ 2963003 (+)
G148388 NA other upstream 899078 2143885 ~ 2145560 (+)
LOC122328040 NA other upstream 1163755 1621992 ~ 1880883 (+)
LOC122327293 myo9b,LOC107566354,LOC107702620,LOC107549373,LOC107698595,LOC107718479 other downstream 66069 3114201 ~ 3153581 (+)
tma7 NA other downstream 175485 3223617 ~ 3224491 (+)
dnase1l4.2 LOC107549369,LOC107718466,LOC107712178,LOC107698583,LOC107566352,LOC107702653 other downstream 181135 3229267 ~ 3238958 (+)
LOC122327575 NA other downstream 205606 3253738 ~ 3254861 (+)
LOC122327325 NA other downstream 249230 3297362 ~ 3592373 (+)

Expression


Co-expression Network