atcaya (atcaya,LOC107698602,LOC107727562,LOC107702639,LOC108430235)


Basic Information

Item Value
gene id atcaya
gene name atcaya,LOC107698602,LOC107727562,LOC107702639,LOC108430235
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 3035058 ~ 3040559 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043222739.1
GATGCTCCATTCATCCTGAGCCTGGACCACCAGCGCTCAGCATTCAGGAGGAGAAGCCACATGACAAAGCATCGCTGATGGTCCTAAAGCATCCTTGCTGGTAATATGTGGACCTATCAAGCAGAATGTAGACGCCTCTGGAACCATGAACATCAAAGTGCCTGATGTGACCTGGAGAGTCAGAGTACTTTTTTTCTTCGGCTCGCAGCGAACAGAGGGGTCTTGTGTTTCTCCCGGAGCACCTGCATCAACACCTGCGTCCTGCTCTGGGTGAAGAGGAAAAATAATCAGTCCAACCAGGAATAATCCGATCCTTATGTCCAGGTTTCTTCAAAATGGGCAGCGTTGACTTCGGCCCACTGATGGAGATCATAGAAGCGAGAGACGAATGGCTGGATGATGATTTTCCCAGGCCACTTCCTGCGGAGGGTGACATGGACTCTTCCTGTGCCCTAAATGATGGGAGAACATCTCCCCCAAACTCTCTCCTCATTGGTGGAGCCGGAGGGGGCGGAGCTCACCGGAAGCGTCGCACGCTGGTGGCCCCAGATATGAACTTGTCGTTGGACCAGAGCGAAGGGTCCCTGCTTTCTGATGACTTCCTGGATACGCCTGATGATCTGGATATTAATGTGGATGATATAGAGACCCCCGATGAGACTGATTCGCTTGAGTTCATCACCAATGGCAACGACCTGGAATGGGAGGATGACACACCAGTCGCCTCAGCCAAAGCACCTCCTGCTGACAGCGACGCTGATGGAGAAGGTGTGGATGGGACAGGTGTCAACGGACGTTTGTGGAGGACCGTGATCATCGGCGAACAGGAACATCGGATCGACATGCAGGTCATACGACCCTATCTGCGCGTCATATCGCATGGAGGGTACTATGGCGAAGGCTTGAACGCCATCATTGTGTTCACGGCATGCTACCTTCCTGACAGCAGCTGCCCAGATTACCATTACCTGATGGAAAACCTCTTCCTGTATGTGGTGAGCAGTCTGGAGATGCTGGTGGCGGAGGATTACCTGATCATATACATGAACGGAGGAACGCCGCGGAGCAAGATGCCCGGCATTAGCTGGCTCAAAAAGTGCTATCAGATGATCGACAGAAGACTGAGAAAAAACCTGAAATCTCTGATCATCACTCATCCGTCCTGGTTCATCCGGACAGTCATCGCAATTTCCAAACCTTTCATCAGTGTGAAGTTCATGAATAAGATCCGTTATGTGCACAGTCTGGAAGAGCTGGAAAAGATTGTTCCTATGGATCATATCCAGATCCCAGAATGTGTCTTACAATTTGAAGAGGAAAGAATGAACGCTAGAAAAGAGAGAATGGAGCAGGAACAGAAAGAACAGCAGCATGAAGAACATCAACAGAAGCCCGTCAATCCAGAGAGGACAACAGCGATCGAAGAACCTGGACTGTGAGCGGACGAGCTTGAACGTTTTTGTTGCTGATCTCGGACCATTAGTCATATTcccaaattatatattaatacgcATATCAGACTCGACACGAAACCGGTCTCAGATCAGCAACAAAACGGAAACCGCAATCGAACGTCGGCGGGTGAGAAGGCCAGACGCTCTCGCTTTCGTCCTCAAAGgcacaattttaaaaaagcatttcaaaatcCGCCAACAGATGGCACCATGCACAGAGAAACGTCGCTGTTTGGTAACAGGATGTACCATCGTGCACTGTAGCCTCTTTGCTGTTAACGCTTTTTTAAATAGGCTCTCCCCTGCTTGCTGACCCTGGAGAATGTCATGTGACCTGCCTTTAATTGACAGGTGTGTCCGCTCAGGATTCGATCGCTGGTGCATGTCGATGTCCAAGCATCTCTGTGCTTCTCTGTGTGTACGCGCCCAAGTCGAATGTAACTTTCTTCCATTTCGCTGATTATGTTTGCCTGGAATCCTTTCTTggatgtttttgaatgttttaaccCCTCCCGTCTTGTTTAATGACCAGCTTTCGTAAACGATAAGTGCCAGTCATCTCTGAACATCTGTACTTTTACGTTGCCTTATGTTTGCTATGAAGAATGgttcaaaattaaacattctgCTCCATGTATGACTACGA
>XM_043222740.1
CATGTGACGCAGCGAGCTGCCAACAACACAAGGCAGCATCACCAGGAAAATGGAGGCAGGTCAGGCGTAGAGGAGCAGCTCCAGCATCACACGCCAGCATGAAGcttctgaaatattaaacagcgtTAAGGCCATGAGATTTCACGCTAGCGTAGAGTAAGAACTCGCAGAACCAGAAAGCATACGTCTCACACAAGCAGGCCACTTCCTGCGGAGGGTGACATGGACTCTTCCTGTGCCCTAAATGATGGGAGAACATCTCCCCCAAACTCTCTCCTCATTGGTGGAGCCGGAGGGGGCGGAGCTCACCGGAAGCGTCGCACGCTGGTGGCCCCAGATATGAACTTGTCGTTGGACCAGAGCGAAGGGTCCCTGCTTTCTGATGACTTCCTGGATACGCCTGATGATCTGGATATTAATGTGGATGATATAGAGACCCCCGATGAGACTGATTCGCTTGAGTTCATCACCAATGGCAACGACCTGGAATGGGAGGATGACACACCAGTCGCCTCAGCCAAAGCACCTCCTGCTGACAGCGACGCTGATGGAGAAGGTGTGGATGGGACAGGTGTCAACGGACGTTTGTGGAGGACCGTGATCATCGGCGAACAGGAACATCGGATCGACATGCAGGTCATACGACCCTATCTGCGCGTCATATCGCATGGAGGGTACTATGGCGAAGGCTTGAACGCCATCATTGTGTTCACGGCATGCTACCTTCCTGACAGCAGCTGCCCAGATTACCATTACCTGATGGAAAACCTCTTCCTGTATGTGGTGAGCAGTCTGGAGATGCTGGTGGCGGAGGATTACCTGATCATATACATGAACGGAGGAACGCCGCGGAGCAAGATGCCCGGCATTAGCTGGCTCAAAAAGTGCTATCAGATGATCGACAGAAGACTGAGAAAAAACCTGAAATCTCTGATCATCACTCATCCGTCCTGGTTCATCCGGACAGTCATCGCAATTTCCAAACCTTTCATCAGTGTGAAGTTCATGAATAAGATCCGTTATGTGCACAGTCTGGAAGAGCTGGAAAAGATTGTTCCTATGGATCATATCCAGATCCCAGAATGTGTCTTACAATTTGAAGAGGAAAGAATGAACGCTAGAAAAGAGAGAATGGAGCAGGAACAGAAAGAACAGCAGCATGAAGAACATCAACAGAAGCCCGTCAATCCAGAGAGGACAACAGCGATCGAAGAACCTGGACTGTGAGCGGACGAGCTTGAACGTTTTTGTTGCTGATCTCGGACCATTAGTCATATTcccaaattatatattaatacgcATATCAGACTCGACACGAAACCGGTCTCAGATCAGCAACAAAACGGAAACCGCAATCGAACGTCGGCGGGTGAGAAGGCCAGACGCTCTCGCTTTCGTCCTCAAAGgcacaattttaaaaaagcatttcaaaatcCGCCAACAGATGGCACCATGCACAGAGAAACGTCGCTGTTTGGTAACAGGATGTACCATCGTGCACTGTAGCCTCTTTGCTGTTAACGCTTTTTTAAATAGGCTCTCCCCTGCTTGCTGACCCTGGAGAATGTCATGTGACCTGCCTTTAATTGACAGGTGTGTCCGCTCAGGATTCGATCGCTGGTGCATGTCGATGTCCAAGCATCTCTGTGCTTCTCTGTGTGTACGCGCCCAAGTCGAATGTAACTTTCTTCCATTTCGCTGATTATGTTTGCCTGGAATCCTTTCTTggatgtttttgaatgttttaaccCCTCCCGTCTTGTTTAATGACCAGCTTTCGTAAACGATAAGTGCCAGTCATCTCTGAACATCTGTACTTTTACGTTGCCTTATGTTTGCTATGAAGAATGgttcaaaattaaacattctgCTCCATGTATGACTACGA

Function

symbol description
atcaya Predicted to enable exopolyphosphatase activity. Acts upstream of or within regulation of cholinergic synaptic transmission. Predicted to be active in cytoplasm. Is expressed in brain; central nervous system; and neurons. Human ortholog(s) of this gene implicated in Cayman type cerebellar ataxia and cerebellar ataxia. Orthologous to human ATCAY (ATCAY kinesin light chain interacting caytaxin).

NR:

description
PREDICTED: caytaxin-like

GO: NA

KEGG:

id description
K18450 ATCAY; caytaxin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043222739.1 True 2100 mRNA 0.49 12 3035058 3040559
XM_043222740.1 False 1888 mRNA 0.49 11 3036668 3040559

Neighbor

gene id symbol gene type direction distance location
c22h19orf44 NA coding upstream 57476 2968495 ~ 2977582 (+)
cers4a cers4a,LOC107561597,LOC107717160 coding upstream 159142 2868088 ~ 2875916 (+)
LOC122327634 ctxn1,LOC108441290,LOC106573568 coding upstream 250528 2770754 ~ 2784530 (+)
timm44 timm44,LOC107561596,LOC107660209,LOC107704494,LOC108441293 coding upstream 275621 2752641 ~ 2759437 (+)
ticam1 NA coding upstream 282806 2749251 ~ 2752252 (+)
LOC122327553 mibp,LOC107566367,LOC107702642,LOC107727561,LOC107734093,LOC107698603,LOC107549391 coding downstream 957 3041516 ~ 3044491 (+)
mydgf mydgf,LOC107727555,LOC107702644,LOC107733317,LOC107698601,LOC107549393,LOC566052,LOC107566370 coding downstream 8566 3049125 ~ 3052719 (+)
cers1 cers1,LOC107702637,LOC107566364,LOC107698599,LOC107733357 coding downstream 26367 3066926 ~ 3079915 (+)
LOC122327513 NA coding downstream 123132 3163691 ~ 3166821 (+)
LOC122327489 LOC107702645,LOC107566368 coding downstream 135325 3175884 ~ 3180904 (+)
G148830 NA non-coding upstream 42646 2990285 ~ 2992412 (+)
LOC122327636 NA non-coding upstream 178974 2806603 ~ 2856084 (+)
G148781 fbn2b,ctxn1,LOC107549363,LOC107742800,LOC107704489,LOC108441290,LOC106573568 non-coding upstream 197109 2770775 ~ 2837949 (+)
G148742 NA non-coding upstream 515916 2518930 ~ 2519142 (+)
G148452 NA non-coding upstream 694647 2338819 ~ 2340411 (+)
G148926 NA non-coding downstream 62013 3102572 ~ 3102903 (+)
G148942 LOC107702631,LOC107698575,LOC107549383 non-coding downstream 142969 3183528 ~ 3189154 (+)
G148973 NA non-coding downstream 184650 3225209 ~ 3226579 (+)
G148975 NA non-coding downstream 187145 3227704 ~ 3228830 (+)
G148979 NA non-coding downstream 204582 3245141 ~ 3245582 (+)
LOC122327475 NA other upstream 72055 2959100 ~ 2963003 (+)
G148388 NA other upstream 889498 2143885 ~ 2145560 (+)
LOC122327951 NA other upstream 1177916 1854867 ~ 1857142 (+)
LOC122327950 NA other upstream 1396052 1626562 ~ 1639006 (+)
G148295 NA other upstream 1409868 1624472 ~ 1625190 (+)
loxl5a loxl5a,LOC107698563,LOC107549379,LOC107733348,LOC108430202,LOC105011451 other downstream 4079 3044638 ~ 3048132 (+)
LOC122327293 myo9b,LOC107566354,LOC107702620,LOC107549373,LOC107698595,LOC107718479 other downstream 73642 3114201 ~ 3153581 (+)
tma7 NA other downstream 183058 3223617 ~ 3224491 (+)
dnase1l4.2 LOC107549369,LOC107718466,LOC107712178,LOC107698583,LOC107566352,LOC107702653 other downstream 188708 3229267 ~ 3238958 (+)
LOC122327575 NA other downstream 213179 3253738 ~ 3254861 (+)

Expression


Co-expression Network