dnase1l4.2 (LOC107549369,LOC107718466,LOC107712178,LOC107698583,LOC107566352,LOC107702653)


Basic Information

Item Value
gene id dnase1l4.2
gene name LOC107549369,LOC107718466,LOC107712178,LOC107698583,LOC107566352,LOC107702653
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 3229267 ~ 3238958 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU220339
TGTGCCAAGATCTGCAAAATCTTTCAACTTTCAGGAAGCCTACAAACTTTCAGACGAACTTGCCCTGGAAATCAGTGATCATTACCCAGTGGAGGTGAGTCTGAAGAAGTCGTCTGCGGCAAAGACCGGCGGCAAAACCAAAGCCAAAACGCAGAAGCGCAAAGCATGATGGGATGCCAATGCACGCTGCAAACTTAATTTCGCTCCACTGAAGGAGAGATGTTACCTCTTCACAAAAAAATTCAggtcttaaaaataatttaagagcAGTTAACTTTTCATGCCAATTTAATTACGGTTTACTTCAAATGcttataaattatgcaaatctca
>TU220340
CCATTCATTATTTACAAGCTGCCTAACGTACAACACAGGAAAACAAGACTTCACTAAACAAAAGCTTCGGTAGACACCATGAAGATCGCATCTTTCAACATCAGACGTTTGGGTCCAAGCAAGCTGTCagacaaaaacattgtaaaatatctCATTAAGATCTTCTCTCGGTACAGTATAATCATTCTTCTTGAGGTGGTGGACAAATCGGGCAAATCTCTAGACAAATTTCTGCAGGAGCTCAACAGCACCGGAGCTAATAAGAAACGCCCCTTCACTATGGTGGGAAGCTCCAGGCTGGGACGGACTCTTTATAAGGAacagtttgtctgtttttacagACAAAGTGAGGCCGAGCTGGTCGACACGTACCAATACGAAGACAATCAAGTGGGTGACGAGGATGCTTTCTCTCGGGAGCCCTTCATCTTGCGTTTCTGCTGTAAACACACAGTGCTAAAAGACTTGGTGTTGATCCCTGTTCACACAAAGCCCAAAGACTCACAGAAGGAACTAGATGAACTATACGACGTCTTTCTGGATGTCAAAGATAAATGGGAAACGGATAATGTCATGATTCTTGGAGACTTCAACGCGGACGGCGCCTACGTCTCCAAGAAGAAGATGAAGTCCATTAGGATCCGCAGCGATCCTGATTTCCACTGGCTGATTGGGGACGATGTGGACACCACAGTTATCCGGTCCAACGATCACACTTACGACAGgATCGTGGTGTACAAAGAGGAA
>TU220341
ACAGGAGAGTTCCTCCCTCTGGGCAAACATTAACTCGGAAGTGGAGCTCTGGAGCGTACAGGTAGACACCATGAAGATCGCATCTTTCAACATCAGACGTTTGGGTCCAAGCAAGCTGTCagacaaaaacattgtaaaatatctCATTAAGATCTTCTCTCGGTACAGTATAATCATTCTTCTTGAGGTGGTGGACAAATCGGGCAAATCTCTAGACAAATTTCTGCAGGAGCTCAACAGCACCGGAGCTAATAAGAAACGCCCCTTCACTATGGTGGGAAGCTCCAGGCTGGGACGGACTCTTTATAAGGAacagtttgtctgtttttacagACAAAGTGAGGCCGAGCTGGTCGACACGTACCAATACGAAGACAATCAAGTGGGTGACGAGGATGCTTTCTCTCGGGAGCCCTTCATCTTGCGTTTCTGCTGTAAACACACAGTGCTAAAAGACTTGGTGTTGATCCCTGTTCACACAAAGCCCAAAGACTCACAGAAGGAACTAGATGAACTATACGACGTCTTTCTGGATGTCAAAGATAAATGGGAAACGGATAATGTCATGATTCTTGGAGACTTCAACGCGGACGGCGCCTACGTCTCCAAGAAGAAGATGAAGTCCATTAGGATCCGCAGCGATCCTGATTTCCACTGGCTGATTGGGGACGATGTGGACACCACAGTTATCCGGTCCAACGATCACACTTACGACAGgATCGTGGTGTACAAAGAGGAA
>TU220342
ACAGGAGAGTTCCTCCCTCTGGGCAAACATTAACTCGGAAGTGGAGCTCTGGAGCGTACAGACACCATGAAGATCGCATCTTTCAACATCAGACGTTTGGGTCCAAGCAAGCTGTCagacaaaaacattgtaaaatatctCATTAAGATCTTCTCTCGGTACAGTATAATCATTCTTCTTGAGGTGGTGGACAAATCGGGCAAATCTCTAGACAAATTTCTGCAGGAGCTCAACAGCACCGGAGCTAATAAGAAACGCCCCTTCACTATGGTGGGAAGCTCCAGGCTGGGACGGACTCTTTATAAGGAacagtttgtctgtttttacagACAAAGTGAGGCCGAGCTGGTCGACACGTACCAATACGAAGACAATCAAGTGGGTGACGAGGATGCTTTCTCTCGGGAGCCCTTCATCTTGCGTTTCTGCTGTAAACACACAGTGCTAAAAGACTTGGTGTTGATCCCTGTTCACACAAAGCCCAAAGACTCACAGAAGGAACTAGATGAACTATACGACGTCTTTCTGGATGTCAAAGATAAATGGGAAACGGATAATGTCATGATTCTTGGAGACTTCAACGCGGACGGCGCCTACGTCTCCAAGAAGAAGATGAAGTCCATTAGGATCCGCAGCGATCCTGATTTCCACTGGCTGATTGGGGACGATGTGGACACCACAGTTATCCGGTCCAACGATCACACTTACGACAGgATCGTGGTGTACAAAGAGGAA
>XM_043222860.1
ACACCATGAAGATCGCATCTTTCAACATCAGACGTTTGGGTCCAAGCAAGCTGTCagacaaaaacattgtaaaatatctCATTAAGATCTTCTCTCGGTACAGTATAATCATTCTTCTTGAGGTGGTGGACAAATCGGGCAAATCTCTAGACAAATTTCTGCAGGAGCTCAACAGCACCGGAGCTAATAAGAAACGCCCCTTCACTATGGTGGGAAGCTCCAGGCTGGGACGGACTCTTTATAAGGAacagtttgtctgtttttacagACAAAGTGAGGCCGAGCTGGTCGACACGTACCAATACGAAGACAATCAAGTGGGTGACGAGGATGCTTTCTCTCGGGAGCCCTTCATCTTGCGTTTCTGCTGTAAACACACAGTGCTAAAAGACTTGGTGTTGATCCCTGTTCACACAAAGCCCAAAGACTCACAGAAGGAACTAGATGAACTATACGACGTCTTTCTGGATGTCAAAGATAAATGGGAAACGGATAATGTCATGATTCTTGGAGACTTCAACGCGGACGGCGCCTACGTCTCCAAGAAGAAGATGAAGTCCATTAGGATCCGCAGCGATCCTGATTTCCACTGGCTGATTGGGGACGATGTGGACACCACAGTTATCCGGTCCAACGATCACACTTACGACAGgATCGTGGTGTACAAAGAGGACATGCtaaactctcttttttttccttctgcaaTTGGGTCGCTGTCTGTGCCAAGATCTGCAAAATCTTTCAACTTTCAGGAAGCCTACAAACTTTCAGACGAACTTGCCCTGGAAATCAGTGATCATTACCCAGTGGAGGTGAGTCTGAAGAAGTCGTCTGCGGCAAAGACCGGCGGCAAAACCAAAGCCAAAACGCAGAAGCGCAAAGCATGATGGGATGCCAATGCACGCTGCAAACTTAATTTCGCTCCACTGAAGGAGAGATGTTACCTCTTCACAAAAAAATTCAggtcttaaaaataatttaagagcAGTTAACTTTTCATGCCAATTTAATTACGGTTTACTTCAAATGcttataaattatgcaaatctcaaaataaacttttcatttgta

Function

NR:

description
PREDICTED: deoxyribonuclease gamma-like isoform X1

GO:

id name namespace
GO:0006308 DNA catabolic process biological_process
GO:0090305 nucleic acid phosphodiester bond hydrolysis biological_process
GO:0004519 endonuclease activity molecular_function
GO:0004536 deoxyribonuclease activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU220339 False 333 lncRNA 0.41 2 3238523 3238938
TU220340 False 747 TUCP 0.46 8 3231548 3235787
TU220341 False 739 TUCP 0.47 8 3229267 3235787
TU220342 False 735 TUCP 0.47 8 3229267 3235787
XM_043222860.1 True 1071 mRNA 0.44 9 3232170 3238958

Neighbor

gene id symbol gene type direction distance location
zgc:171566 zgc:171566,LOC107718463,LOC107698580,LOC107549371,LOC107702651,LOC107712179,LOC108444051 coding upstream 32903 3193319 ~ 3196364 (+)
LOC122327485 LOC107718467,LOC107549388,LOC107698584,LOC107702645,LOC107566368 coding upstream 36165 3188402 ~ 3193102 (+)
LOC122327489 LOC107702645,LOC107566368 coding upstream 48363 3175884 ~ 3180904 (+)
LOC122327513 NA coding upstream 62446 3163691 ~ 3166821 (+)
cers1 cers1,LOC107702637,LOC107566364,LOC107698599,LOC107733357 coding upstream 149352 3066926 ~ 3079915 (+)
si:dkey-222f2.1 si:dkey-222f2.1,LOC107712176,LOC107694007,LOC107718458,LOC107698573 coding downstream 6682 3245640 ~ 3250629 (+)
LOC122327483 NA coding downstream 39223 3278181 ~ 3280208 (+)
zmp:0000000652 NA coding downstream 48962 3287920 ~ 3289605 (+)
LOC122327571 NA coding downstream 127079 3366037 ~ 3367223 (+)
LOC122328128 NA coding downstream 413112 3652070 ~ 3654665 (+)
G148975 NA non-coding upstream 437 3227704 ~ 3228830 (+)
G148973 NA non-coding upstream 2688 3225209 ~ 3226579 (+)
G148942 LOC107702631,LOC107698575,LOC107549383 non-coding upstream 40113 3183528 ~ 3189154 (+)
G148926 NA non-coding upstream 126364 3102572 ~ 3102903 (+)
G148830 NA non-coding upstream 236855 2990285 ~ 2992412 (+)
G148979 NA non-coding downstream 6183 3245141 ~ 3245582 (+)
G148968 NA non-coding downstream 16504 3255462 ~ 3257706 (+)
LOC122327591 NA non-coding downstream 29165 3268123 ~ 3271755 (+)
G148994 NA non-coding downstream 61643 3300601 ~ 3301244 (+)
LOC122327590 NA non-coding downstream 91761 3330719 ~ 3331434 (+)
tma7 NA other upstream 4776 3223617 ~ 3224491 (+)
LOC122327293 myo9b,LOC107566354,LOC107702620,LOC107549373,LOC107698595,LOC107718479 other upstream 75686 3114201 ~ 3153581 (+)
loxl5a loxl5a,LOC107698563,LOC107549379,LOC107733348,LOC108430202,LOC105011451 other upstream 181135 3044638 ~ 3048132 (+)
LOC122327475 NA other upstream 266264 2959100 ~ 2963003 (+)
G148388 NA other upstream 1083707 2143885 ~ 2145560 (+)
LOC122327575 NA other downstream 14780 3253738 ~ 3254861 (+)
LOC122327325 NA other downstream 58404 3297362 ~ 3592373 (+)
G149028 NA other downstream 332135 3571093 ~ 3574473 (+)
G148992 NA other downstream 353703 3592661 ~ 3595300 (+)
LOC122328138 NA other downstream 538622 3777580 ~ 3779676 (+)

Expression


Co-expression Network