RNA id: TU220340


Basic Information

Item Value
RNA id TU220340
length 747
RNA type TUCP
GC content 0.46
exon number 8
gene id dnase1l4.2
representative False

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 3229267 ~ 3238958 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CCATTCATTATTTACAAGCTGCCTAACGTACAACACAGGAAAACAAGACTTCACTAAACAAAAGCTTCGGTAGACACCATGAAGATCGCATCTTTCAACATCAGACGTTTGGGTCCAAGCAAGCTGTCagacaaaaacattgtaaaatatctCATTAAGATCTTCTCTCGGTACAGTATAATCATTCTTCTTGAGGTGGTGGACAAATCGGGCAAATCTCTAGACAAATTTCTGCAGGAGCTCAACAGCACCGGAGCTAATAAGAAACGCCCCTTCACTATGGTGGGAAGCTCCAGGCTGGGACGGACTCTTTATAAGGAacagtttgtctgtttttacagACAAAGTGAGGCCGAGCTGGTCGACACGTACCAATACGAAGACAATCAAGTGGGTGACGAGGATGCTTTCTCTCGGGAGCCCTTCATCTTGCGTTTCTGCTGTAAACACACAGTGCTAAAAGACTTGGTGTTGATCCCTGTTCACACAAAGCCCAAAGACTCACAGAAGGAACTAGATGAACTATACGACGTCTTTCTGGATGTCAAAGATAAATGGGAAACGGATAATGTCATGATTCTTGGAGACTTCAACGCGGACGGCGCCTACGTCTCCAAGAAGAAGATGAAGTCCATTAGGATCCGCAGCGATCCTGATTTCCACTGGCTGATTGGGGACGATGTGGACACCACAGTTATCCGGTCCAACGATCACACTTACGACAGgATCGTGGTGTACAAAGAGGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU220338 lncRNA upstream 2718 3227704 ~ 3228830 (+) True G148975
TU220336 lncRNA upstream 4969 3225209 ~ 3226579 (+) True G148973
TU220299 lncRNA upstream 42394 3183528 ~ 3189154 (+) True G148942
TU220266 lncRNA upstream 128645 3102572 ~ 3102903 (+) True G148926
TU220073 lncRNA upstream 239136 2991299 ~ 2992412 (+) False G148830
TU220339 lncRNA downstream 2736 3238523 ~ 3238938 (+) False dnase1l4.2
TU220346 lncRNA downstream 9354 3245141 ~ 3245582 (+) True G148979
TU220328 lncRNA downstream 17983 3253770 ~ 3254856 (+) False LOC122327575
TU220330 lncRNA downstream 19675 3255462 ~ 3257706 (+) True G148968
XR_006247671.1 lncRNA downstream 32336 3268123 ~ 3271755 (+) True LOC122327591
XM_043223028.1 mRNA upstream 7057 3223617 ~ 3224491 (+) True tma7
XM_043222798.1 mRNA upstream 35184 3193319 ~ 3196364 (+) True zgc:171566
XM_043222888.1 mRNA upstream 38446 3188402 ~ 3193102 (+) False LOC122327485
XM_043222690.1 mRNA downstream 9853 3245640 ~ 3250629 (+) False si:dkey-222f2.1
XM_043222689.1 mRNA downstream 9877 3245664 ~ 3250629 (+) True si:dkey-222f2.1
XM_043223029.1 mRNA downstream 17951 3253738 ~ 3254861 (+) True LOC122327575
XM_043222882.1 mRNA downstream 42394 3278181 ~ 3280208 (+) True LOC122327483
XM_043222883.1 mRNA downstream 42394 3278181 ~ 3280203 (+) False LOC122327483
TU220335 other upstream 7058 3223628 ~ 3224490 (+) False tma7
XR_006247629.1 other upstream 78983 3114202 ~ 3152565 (+) False LOC122327293
XR_006247630.1 other upstream 79112 3114202 ~ 3152436 (+) False LOC122327293
XR_006247636.1 other upstream 183772 3044638 ~ 3047776 (+) False loxl5a
TU219297 other upstream 1085988 2143885 ~ 2145560 (+) True G148388
XR_006247633.1 other downstream 61575 3297362 ~ 3304754 (+) True LOC122327325
TU220369 other downstream 61586 3297373 ~ 3592373 (+) False LOC122327325
TU220371 other downstream 61586 3297373 ~ 3592373 (+) False LOC122327325
TU220429 other downstream 335306 3571093 ~ 3574473 (+) True G149028
TU220368 other downstream 354852 3590639 ~ 3592373 (+) False LOC122327325

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000030_10654923_10662255.mRNA True 1989 mRNA 0.41 8 CI01000030 10654916 ~ 10663268 (-)